Evidence map›Paper›PMID 42350423›Full record

ArticleNature communications2026

Mechanistic insights into modulation of productive substrate accessibility for efficient PET depolymerization.

Dongwoo Ki, Jiyoung Park, Hwaseok Hong, Hogyun Seo, Beomsu Kim, Hyeonwoo Hwang, Kyung-Jin Kim

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dongwoo Ki *School of Life Sciences, BK21 FOUR KNU Creative BioResearch Group, Kyungpook National University, Daegu, Republic of Korea.ORCID http://orcid.org/0000-0002-5454-8616
Jiyoung Park *KNU Institute for Microorganisms, Kyungpook National University, Daegu, Republic of Korea.ORCID http://orcid.org/0000-0002-8126-1012
Hwaseok HongInstitute of Biotechnology, CJ CheilJedang Co., Suwon-si, Republic of Korea.
Hogyun SeoKNU Institute for Microorganisms, Kyungpook National University, Daegu, Republic of Korea.ORCID http://orcid.org/0000-0002-8465-8373
Beomsu KimSchool of Life Sciences, BK21 FOUR KNU Creative BioResearch Group, Kyungpook National University, Daegu, Republic of Korea.
Hyeonwoo HwangSchool of Life Sciences, BK21 FOUR KNU Creative BioResearch Group, Kyungpook National University, Daegu, Republic of Korea.
Kyung-Jin KimSchool of Life Sciences, BK21 FOUR KNU Creative BioResearch Group, Kyungpook National University, Daegu, Republic of Korea. kkim@knu.ac.kr.ORCID http://orcid.org/0000-0002-0375-2561

Funding

Korea Institute for Advancement of Technology (KIAT) P0028353Ministry of Trade, Industry and Energy (Ministry of Trade, Industry and Energy, Korea) RS-2025-06082970Ministry of Trade, Industry and Energy (Ministry of Trade, Industry and Energy, Korea) RS-2025-10702985National Research Foundation of Korea (NRF) RS-2024-00439872
6 · The paper itself

Abstract

Polyethylene terephthalate (PET) hydrolases have been extensively studied for their potential applications in plastic degradation. However, the structural and mechanistic factors that limit their catalytic efficiency are not yet fully understood. Here, we identify the protruding, surface-exposed C-terminal loop (SEC-loop) in Cryptosporangium aurantiacum PETase (CaPETase) that negatively impacts enzymatic activity by restricting productive access of enzyme to PET. Loop replacement experiments show the non-protruding SEC-loop enhances PET depolymerization rates, despite being ~25 Å from the active site. Kinetic and adsorption studies indicate the non-protruding SEC-loop promotes productive PET access to the enzyme without affecting binding affinity. To further assess the broader applicability of this strategy across diverse PETases, SEC-loop replaced variants of representative PETases are characterized through kinetic and adsorption analyses. We show an engineering strategy focused on modulating enzyme accessibility rather than simply modifying the catalytic site, in rational enzyme design aimed at improving PET degradation efficiency.

Indexed as

Carboxylic Ester HydrolasesHydrolasesPolyethylene TerephthalatesCatalytic DomainKineticsModels, MolecularPolymerizationProtein EngineeringSubstrate SpecificityCarboxylic Ester HydrolasesHydrolasesPolyethylene Terephthalates

Identifiers

PMID42350423
PMCPMC13448678

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.