Evidence map›Paper›PMID 42350382›Full record

ArticleNature communications2026

Universal graph-based identifiers of chemical structures for linking large material databases.

Koki Muraoka, Taku Tanimoto, Tsubasa Munekata, Akira Nakayama

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Koki MuraokaDepartment of Chemical System Engineering, The University of Tokyo, Bunkyo-ku, Tokyo, Japan. muraok_k@chemsys.t.u-tokyo.ac.jp.
Taku TanimotoDepartment of Chemical System Engineering, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Tsubasa MunekataDepartment of Chemical System Engineering, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Akira NakayamaDepartment of Chemical System Engineering, The University of Tokyo, Bunkyo-ku, Tokyo, Japan. nakayama@chemsys.t.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0002-7330-0317

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 21K20551MEXT | Japan Society for the Promotion of Science (JSPS) 22K14751MEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO) JPMJPR2378
6 · The paper itself

Abstract

The rapid expansion of computational databases of materials, driven by advancements in computational speeds, storage, and algorithm development, has enabled the unified treatment of materials with various compositions and structures. However, the lack of universal identifiers for chemical structures impedes the efficient utilization of databases. To address this issue, we propose an identifier named Graph ID, which is based on chemically intuitive atomic distances and a novel node labeling scheme. Graph ID exhibits scalability and can accurately differentiate between structurally distinct materials. It can be applied to various chemical structures, including bulk crystals, surface structures, and molecules. The code to generate Graph ID is available as open-source software, which will contribute to accelerating materials simulations and data analysis.

Identifiers

PMID42350382
PMCPMC13303917

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.