Evidence map›Paper›PMID 42347167›Full record

ArticleMicrobial genomics2026

A standardized core genome multilocus sequence typing and life identification number barcoding framework for global

Angela V Lopez Garcia, Keith A Jolley, Kasia M Parfitt, Amro Hashish, Yuko Sato, Mohamed El-Gazzar, Javier Nunez-Garcia, Catherine Fearnley, Samuel K Sheppard, Martin C J Maiden and 1 more

Abstract read
In one paragraph

Article in Microbial genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Angela V Lopez GarciaDepartment of Bacteriology, Animal and Plant Health Agency, New Haw, Addlestone, Surrey, KT15 3NB, UK.
Keith A JolleyDepartment of Biology, Life and Mind Building, University of Oxford, South Parks Road, Oxford, OX1 3EL, UK.
Kasia M ParfittDepartment of Biology, Life and Mind Building, University of Oxford, South Parks Road, Oxford, OX1 3EL, UK.
Amro HashishDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA 50011, USA.
Yuko SatoDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA 50011, USA.
Mohamed El-GazzarDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA 50011, USA.
Javier Nunez-GarciaDepartment of Bacteriology, Animal and Plant Health Agency, New Haw, Addlestone, Surrey, KT15 3NB, UK.
Catherine FearnleyDepartment of Bacteriology, Animal and Plant Health Agency, New Haw, Addlestone, Surrey, KT15 3NB, UK.
Samuel K SheppardDepartment of Biology, Ineos Oxford Institute for Antimicrobial Research, Life and Mind Building, University of Oxford, Oxford, OX1 3EL, UK.
Martin C J MaidenDepartment of Biology, Life and Mind Building, University of Oxford, South Parks Road, Oxford, OX1 3EL, UK.
Muna F AnjumDepartment of Bacteriology, Animal and Plant Health Agency, New Haw, Addlestone, Surrey, KT15 3NB, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Effective pathogen surveillance requires robust typing systems for outbreak detection and understanding transmission dynamics, evolutionary patterns, host colonization and disease progression.

Indexed as

DNA Barcoding, TaxonomicGenome, BacterialMultilocus Sequence TypingPasteurella InfectionsPasteurella multocidaAnimalsDisease OutbreaksHumanscgMLST-based Life Identification Number (cgLIN) codecore genome multilocus sequence typing (cgMLST)global surveillancePasteurella multocidapopulation structuretyping scheme

Identifiers

PMID42347167
PMCPMC13308733

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.