Evidence map›Paper›PMID 42345069›Full record

ArticleJournal of chemical information and modeling2026

Guided Adaptive Diffusion: An Evolutionary Framework for Multimodal Atomistic Structure Prediction.

Alexander Adel, Jakub Szmitek, Benedikt Hartl, Ralf Wanzenböck, Georg K H Madsen

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alexander AdelInstitute of Materials Chemistry, TU Wien, Vienna 1060, Austria.
Jakub SzmitekInstitute of Materials Chemistry, TU Wien, Vienna 1060, Austria.
Benedikt HartlAllen Discovery Center at Tufts University, Medford, Massachusetts 02155, United States.ORCID 0000-0001-7787-4839
Ralf WanzenböckInstitute of Materials Chemistry, TU Wien, Vienna 1060, Austria.ORCID 0000-0002-3111-9149
Georg K H MadsenInstitute of Materials Chemistry, TU Wien, Vienna 1060, Austria.ORCID 0000-0001-9844-9145

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Atomistic structure prediction requires search algorithms capable of locating global and local minima on high-dimensional, multimodal potential energy surfaces. Traditional algorithms tend to become less effective as the dimensionality of the search space increases. In this work, we introduce an adaptive diffusion framework that reinterprets the neural-network-based denoising process as an evolutionary search mechanism for structure optimization. The framework incorporates two key optimization mechanisms. First, geometric constraints provide physics-informed guidance during sampling. Second, a memetic approach combines the global diverse sampling capabilities of diffusion models with local gradient-based relaxation. Unlike heuristic evolutionary algorithms, which rely on predefined analytical update rules for comparatively simple search distributions, neural-network-based denoising learns the underlying structure of the search space directly from the full accumulated history of sampled configurations, enabling the representation of highly complex distributions. We benchmark the algorithm using Lennard-Jones and gold clusters, demonstrating its ability to locate the global minimum and an ensemble of low-energy local minima within a single evolutionary run. The results indicate that the algorithm remains effective on high-dimensional potential energy surfaces, maintaining both population diversity and search efficiency throughout the optimization.

Indexed as

AlgorithmsDiffusionNeural Networks, Computer

Identifiers

PMID42345069
PMCPMC13370864

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.