Evidence map›Paper›PMID 42342705›Full record

ArticleScientific data2026

A chromosome-level genome assembly of SAGS Anisodus tanguticus (Maxim.) Pascher (Solanaceae) from the Tibetan region of Sichuan, China.

Gang Liu, Dan Su, Yutong Liu, Zhan Shi, Shenzhong Gao, Xin He, Shiyin Zhang, Heng Deng, Jingjing Xiao, Yinan Yao and 1 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Gang Liu *National Forestry and Grassland Administration Key Laboratory of Alpine Grassland Ecosystem Conservation and Restoration on the Qinghai-Tibetan Plateau, Sichuan Academy of Grassland Sciences, Chengdu, 611731, China. 350903876@qq.com.
Dan Su *Bio-Med Informatics Research Center, Xinqiao Hospital, Army Medical University, 400037, Chongqing, China.
Yutong Liu *National Forestry and Grassland Administration Key Laboratory of Alpine Grassland Ecosystem Conservation and Restoration on the Qinghai-Tibetan Plateau, Sichuan Academy of Grassland Sciences, Chengdu, 611731, China.
Zhan ShiEngineering Research Center of Biomass Materials, Ministry of Education, College of Life Sciences and Agri-forestry, Southwest University of Science and Technology, Mianyang, 621010, China.
Shenzhong GaoEngineering Research Center of Biomass Materials, Ministry of Education, College of Life Sciences and Agri-forestry, Southwest University of Science and Technology, Mianyang, 621010, China.
Xin HeNational Forestry and Grassland Administration Key Laboratory of Alpine Grassland Ecosystem Conservation and Restoration on the Qinghai-Tibetan Plateau, Sichuan Academy of Grassland Sciences, Chengdu, 611731, China.
Shiyin ZhangNational Forestry and Grassland Administration Key Laboratory of Alpine Grassland Ecosystem Conservation and Restoration on the Qinghai-Tibetan Plateau, Sichuan Academy of Grassland Sciences, Chengdu, 611731, China.
Heng DengEngineering Research Center of Biomass Materials, Ministry of Education, College of Life Sciences and Agri-forestry, Southwest University of Science and Technology, Mianyang, 621010, China.
Jingjing XiaoBio-Med Informatics Research Center, Xinqiao Hospital, Army Medical University, 400037, Chongqing, China.
Yinan YaoEngineering Research Center of Biomass Materials, Ministry of Education, College of Life Sciences and Agri-forestry, Southwest University of Science and Technology, Mianyang, 621010, China. yinanyao@swust.edu.cn.
Peng ShuBio-Med Informatics Research Center, Xinqiao Hospital, Army Medical University, 400037, Chongqing, China. sp1373751728@tmmu.edu.cn.

Funding

China Forage and Grass Research System CARS-34
6 · The paper itself

Abstract

Anisodus tanguticus (Maxim.) Pascher (A. tanguticus), a cold-tolerant perennial herb in the Solanaceae family, is distributed across China's Qinghai-Tibet Plateau and extends to Nepal, Bhutan, Sikkim, and India. As a Tibetan medicinal plant, it is used to treat pain, ulcers, etc.; its roots yield antispasmodic and anesthetic compounds, and other parts are used as a feed additive for yaks to enhance cold resistance in northwest Sichuan. In this study, samples were collected from Seda County (northwestern Sichuan, China) for sequencing. Using PacBio HiFi sequencing and Hi-C scaffolding, a high-quality chromosome-scale genome assembly was generated, with a genome size of 1599.64 Mb, a scaffold N50 of 62.01 Mb, and a contig N50 of 38.51 Mb. A total of 24 superscaffolds (93.65% of the genome) were anchored to 24 chromosomes. Compared with previously reported assemblies of A. tanguticus and A. acutangulus, this assembly shows improved scaffold length and completeness. Genome annotation identified 64.95% repetitive elements and 45,930 protein-coding genes, and comparative analysis of four Anisodus genomes revealed conserved patterns of gene density, GC content, LTR, and LINE elements. This study provides the first high-quality chromosome-scale genome resource of A. tanguticus from the Qinghai-Tibet Plateau, supporting studies on phylogeny, genetic diversity, and breeding, as well as further exploration of its genomic basis of high-altitude adaptation.

Indexed as

Chromosomes, PlantGenome, PlantSolanaceaeChinaTibet

Identifiers

PMID42342705
PMCPMC13655172

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.