Evidence map›Paper›PMID 42328163›Full record

ArticleFrontiers in cellular and infection microbiology2026

Pilot longitudinal integrated transcriptomic-metabolomic study reveals immune and metabolic signatures in non-hospitalized healthcare workers with long COVID.

Estefanía Espín, Chengliang Yang, Casey P Shannon, Abhinav K Checkervarty, Sehyeon Kim, Linda Lapp, Sara Assadian, Brian Grunau, David M Goldfarb, Jacob Hutton and 2 more

Abstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Estefanía EspínPrevention of Organ Failure (PROOF) Centre of Excellence, Providence Research. St. Paul's Hospital, Vancouver, BC, Canada.
Chengliang YangPrevention of Organ Failure (PROOF) Centre of Excellence, Providence Research. St. Paul's Hospital, Vancouver, BC, Canada.
Casey P ShannonPrevention of Organ Failure (PROOF) Centre of Excellence, Providence Research. St. Paul's Hospital, Vancouver, BC, Canada.
Abhinav K CheckervartyPrevention of Organ Failure (PROOF) Centre of Excellence, Providence Research. St. Paul's Hospital, Vancouver, BC, Canada.
Sehyeon KimDepartment of Chemistry, Faculty of Science, The University of British Columbia, Vancouver, BC, Canada.
Linda LappDepartment of Anesthesiology, Pharmacology and Therapeutics, Faculty of Medicine, The University of British Columbia, Vancouver, BC, Canada.
Sara AssadianPrevention of Organ Failure (PROOF) Centre of Excellence, Providence Research. St. Paul's Hospital, Vancouver, BC, Canada.
Brian GrunauDepartment of Emergency Medicine, Faculty of Medicine, The University of British Columbia, St. Paul's Hospital, Vancouver, BC, Canada.
David M GoldfarbDepartment of Pathology and Laboratory Medicine, The University of British Columbia, Vancouver, BC, Canada.
Jacob HuttonDepartment of Emergency Medicine, Faculty of Medicine, The University of British Columbia, St. Paul's Hospital, Vancouver, BC, Canada.
Tao HuanDepartment of Chemistry, Faculty of Science, The University of British Columbia, Vancouver, BC, Canada.
Scott J TebbuttPrevention of Organ Failure (PROOF) Centre of Excellence, Providence Research. St. Paul's Hospital, Vancouver, BC, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Long COVID affects hundreds of millions of individuals worldwide, yet its underlying biological mechanisms remain incompletely understood, and the absence of validated biomarkers continues to limit diagnosis and clinical management. Most biomarker studies have focused on hospitalized patients with severe disease, leaving non-hospitalized populations, particularly healthcare workers, who are at high occupational risk, underrepresented. This gap may constrain the identification of biomarkers relevant to milder but persistent post-acute phenotypes. Methods: We performed integrated transcriptomic and metabolomic profiling in a longitudinal cohort of non-hospitalized healthcare workers with long COVID (N = 12), primarily presenting with fatigue and brain fog, and matched controls who recovered from SARS-CoV-2 infection without sequelae (N = 35). Whole-blood RNA extracted from PAXgene tubes was profiled using the NanoString nCounter PanCancer Immune Panel. Serum metabolites collected pre- and post-infection were analyzed using untargeted ultra-high-performance liquid chromatography-mass spectrometry. Differential expression and metabolite abundance were assessed using linear models with false discovery rate correction. Significant features were integrated using network- and pathway-based approaches to identify coordinated immune-metabolic alterations in long COVID. Results: Transcriptomic analysis identified 63 differentially expressed genes, including neutrophil-associated markers such as Discussion: These findings generate hypotheses regarding potential links between persistent innate immune activation, metabolic reprogramming, and neurocognitive or systemic symptoms in long COVID. The observed signatures suggest immune-metabolic perturbations involving neutrophil-associated inflammatory pathways and broader cellular stress responses. However, given cohort size, platform-specific constraints, and cross-cohort heterogeneity, these signals should be interpreted at the pathway level and considered candidate mechanisms requiring validation in larger, independent cohorts of non-hospitalized individuals.

Indexed as

COVID-19Health PersonnelMetabolomeTranscriptomeAdultBiomarkersFemaleGene Expression ProfilingHumansLongitudinal StudiesMaleMetabolomicsMiddle AgedMultiomicsPilot ProjectsPost-Acute COVID-19 SyndromeBiomarkersbiomarkerslong covidmetabolomicsoutpatientstranscriptomics

Identifiers

PMID42328163
PMCPMC13275656

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.