Evidence map›Paper›PMID 42315670›Full record

ArticleApoptosis : an international journal on programmed cell death2026

Apoptosis execution is spatially regulated.

Nevena Milivojević Dimitrijević, Ana Mirić, Tijana Đukić, Ivica Petrović, Ana Kesić, Vladimir Jurišić, Luka Dragačević, Marko N Živanović, Nenad Filipović

Abstract read
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In one paragraph

Article in Apoptosis : an international journal on programmed cell death, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nevena Milivojević DimitrijevićDepartment of Science, University of Kragujevac, Institute for Information Technologies Kragujevac, Liceja Kneževine Srbije 1A, 34000, Kragujevac, Serbia.ORCID 0000-0002-4518-1066
Ana MirićDepartment of Science, University of Kragujevac, Institute for Information Technologies Kragujevac, Liceja Kneževine Srbije 1A, 34000, Kragujevac, Serbia.ORCID 0000-0002-4373-2864
Tijana ĐukićDepartment of Science, University of Kragujevac, Institute for Information Technologies Kragujevac, Liceja Kneževine Srbije 1A, 34000, Kragujevac, Serbia.ORCID 0000-0002-9913-6527
Ivica PetrovićDepartment of Pathophysiology, Faculty of Medical Sciences, University of Kragujevac, Svetozara Markovica 69, 34 000, Kragujevac, Serbia.ORCID 0000-0003-2056-1158
Ana KesićDepartment of Science, University of Kragujevac, Institute for Information Technologies Kragujevac, Liceja Kneževine Srbije 1A, 34000, Kragujevac, Serbia.ORCID 0000-0002-8729-8748
Vladimir JurišićDepartment of Pathophysiology, Faculty of Medical Sciences, University of Kragujevac, Svetozara Markovica 69, 34 000, Kragujevac, Serbia.ORCID 0000-0001-6525-128X
Luka DragačevićInstitute of Virology, Vaccines and Serums ''Torlak'', University of Belgrade, Vojvode Stepe 458, 11 000, Belgrade, Serbia.ORCID 0000-0003-1662-0493
Marko N ŽivanovićDepartment of Science, University of Kragujevac, Institute for Information Technologies Kragujevac, Liceja Kneževine Srbije 1A, 34000, Kragujevac, Serbia. marko.zivanovic@uni.kg.ac.rs.ORCID 0000-0002-8833-8035
Nenad FilipovićFaculty of Engineering, University of Kragujevac, Sestre Janjić 6, 34 000, Kragujevac, Serbia.ORCID 0000-0001-9964-5615

Funding

Serbian ministry of Science 451-03-33/2026-03/200107Serbian ministry of Science 451-03-33/2026-03/200378
6 · The paper itself

Abstract

Three-dimensional (3D) cell culture models are increasingly used in biomedicine, while two-dimensional (2D) systems represent a simplified approach with limited intercellular interactions and no spatial organization. The aim of this work was to compare the response of tumor cells to cytotoxic chemical complexes in 2D and 3D conditions, with a special focus on apoptosis. The results showed a pronounced paradox: although proapoptotic markers (Bax/Bcl-2 ratio and caspase-3) were higher in the 2D system, the phenotypic outcome indicated a higher frequency of late apoptosis in 3D conditions, with a lower percentage of viable cells. These findings indicate that molecular markers do not directly reflect the outcome of cell death, but the apoptotic response depends on the spatial context. The mathematical model offered additional quantitative insight that may help to contextualize these differences, suggesting localized hypoxic and metabolic adaptation in 3D systems. In conclusion, in HCT-116 treated with Au(III) complexes, 2D and 3D models represent qualitatively different modes of response. These observations support the hypothesis that apoptosis execution is shaped by spatial context, pending validation in additional cell lines and platforms.

Indexed as

Apoptosisbcl-2-Associated X ProteinCaspase 3Cell Culture Techniques, Three DimensionalCell Line, TumorHCT116 CellsHumansProto-Oncogene Proteins c-bcl-2bcl-2-Associated X ProteinCaspase 3Proto-Oncogene Proteins c-bcl-22D cell culture3D cell cultureApoptosisCancer cellsMathematical modelingSpatial context

Identifiers

PMID42315670

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.