Evidence map›Paper›PMID 42310348›Full record

ArticleScientific reports2026

A-to-I RNA editing remodels 5'-UTR initiation codons to tune translational output.

Yuki Ogata, Asuka Ichinomiya, Momoko Tomikura, Masatora Fukuda

Abstract read
In one paragraph

Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Yuki OgataDepartment of Chemistry, Faculty of Science, Fukuoka University, Fukuoka, 814-0180, Japan.
Asuka IchinomiyaDepartment of Chemistry, Faculty of Science, Fukuoka University, Fukuoka, 814-0180, Japan.
Momoko TomikuraDepartment of Chemistry, Faculty of Science, Fukuoka University, Fukuoka, 814-0180, Japan.
Masatora FukudaDepartment of Chemistry, Faculty of Science, Fukuoka University, Fukuoka, 814-0180, Japan. masatora@fukuoka-u.ac.jp.ORCID https://orcid.org/0000-0003-1296-5216

Funding

Fukuoka University Research Project GR2506Institute of Advanced Energy, Kyoto University ZE2025-B11Japan Science Society 2024-602Japan Society for the Promotion of Science JP24K08624
6 · The paper itself

Abstract

A-to-I RNA editing is a prevalent post-transcriptional modification in higher eukaryotes that converts adenosine to inosine within RNA molecules. Because inosine is interpreted as guanosine during translation, editing can alter codon identity and potentially influence translation initiation signals. Here, we examined whether A-to-I editing within the 5' untranslated region (5'-UTR) can remodel upstream initiation codons and thereby tune downstream translation. Using luciferase-based reporter systems, we show that AUA-to-AUI editing generates an initiation-competent inosine-containing codon, whereas AUG-to-IUG editing markedly attenuates initiation and can relieve uORF-mediated repression. Quantitative in vitro and cellular assays establish the initiation hierarchy AUA < AUI < AUG, with IUG exhibiting strongly reduced initiation efficiency. Importantly, AUI-mediated upstream initiation did not behave like a canonical AUG-initiated uORF in the tested contexts; its effect on downstream ORF translation was modest and context-dependent. Transcriptome-wide bioinformatic analysis identified endogenous human transcripts whose 5'-UTRs harbor editing sites compatible with initiation-codon gain or attenuation. Reporter validation using native 5'-UTR sequences supports the possibility that editing-dependent initiation-codon remodeling can tune translational output in living cells, particularly through AUG-to-IUG-mediated derepression. Together, these findings establish a reporter-based framework in which A-to-I editing can remodel 5'-UTR initiation codons, while highlighting the need for endogenous protein-level and native-locus validation to determine physiological relevance.

Indexed as

5' Untranslated RegionsAdenosineCodon, InitiatorInosineProtein BiosynthesisRNA EditingHEK293 CellsHumans5' Untranslated RegionsAdenosineCodon, InitiatorInosineADARPost-transcriptional regulationRNA editingTranslational control

Identifiers

PMID42310348
PMCPMC13542072

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.