Evidence map›Paper›PMID 42305051›Full record

ArticleSmall methods2026

A Versatile Multiplexed Immunofluorescence Strategy for Efficient, Host-Independent, and Scalable Spatial Protein Profiling.

Phuong Nguyen, Hongqiang Ma, Dimitrios S Gotsis, Maomao Chen, Chaojie Zhang, Tushar Talukder Showrav, Marc Schwartz, Brenda Diergaarde, Robert E Schoen, Rhonda M Brand and 2 more

Abstract read
In one paragraph

Article in Small methods, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Phuong NguyenGrainger College of Engineering, Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, USA.
Hongqiang MaGrainger College of Engineering, Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, USA.
Dimitrios S GotsisGrainger College of Engineering, Department of Electrical and Computer Engineering, University of Illinois Urbana-Champaign, Urbana, Illinois, USA.
Maomao ChenDepartment of Medicine, Division of Gastroenterology, Hepatology and Nutrition, University of Pittsburgh, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.
Chaojie ZhangGrainger College of Engineering, Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, USA.
Tushar Talukder ShowravGrainger College of Engineering, Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, USA.
Marc SchwartzDepartment of Medicine, Division of Gastroenterology, Hepatology and Nutrition, University of Pittsburgh, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.
Brenda DiergaardeDepartment of Human Genetics, University of Pittsburgh School of Public Health, Pittsburgh, Pennsylvania, USA.
Robert E SchoenDepartment of Medicine, Division of Gastroenterology, Hepatology and Nutrition, University of Pittsburgh, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.
Rhonda M BrandDepartment of Medicine, Division of Gastroenterology, Hepatology and Nutrition, University of Pittsburgh, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.
Hua ZhangHillman Cancer Center, University of Pittsburgh Medical Center (UPMC), Pittsburgh, Pennsylvania, USA.
Yang LiuGrainger College of Engineering, Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, Illinois, USA.ORCID 0000-0002-6388-9674

Funding

The Center for Label-free Imagingand Multiscale Biophotonics (CLIMB)P41EB031772 · NIBIB · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Stephen A Boppart · 2022 to 2026
$7.6M
Imaging nanoscale chromatin folding in early carcinogenesisR01CA254112 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LIU, YANG · 2020 to 2025
$2.2M
Ultrahigh-throughput imaging of 3D tumor microenvironment at nanoscaleR01CA301488 · NCI · CARNEGIE-MELLON UNIVERSITY · PI Yang Liu, Hongqiang Ma · 2025 to 2026
$1.2M
NCI NIH HHS R01 CA254112NCI NIH HHS R01 CA301488NIBIB NIH HHS P41 EB031772NIH HHS P41EB031772NIH HHS R01CA254112NIH HHS R01CA301488
6 · The paper itself

Abstract

Immunofluorescence (IF) remains a central method for high-content spatial biology, but current approaches face several technical barriers. Indirect two-step IF is the most widely used but constrained by host-species requirements and lengthy workflows. Direct IF avoids this constraint but requires chemical conjugation of each primary antibody to a fluorophore, resulting in weaker signals, fixed antibody-fluorophore pairings, and reduced flexibility. Antibody-nanobody complexes provide a promising host-independent solution but have been limited by inconsistent performance and reduced efficiency. Commercial spatial biology platforms achieve high-plex imaging, but many rely on costly custom reagents or specialized microfluidics instrumentation, limiting broad accessibility. We introduce umIF, a strategy that leverages macromolecular crowding to enhance labeling efficiency across diverse IF workflows. It enables robust, host-independent multiplexing with antibody-nanobody complexes, while also improving performance across direct, one-step, and two-step IF workflows, including detection of weak targets. We demonstrate both single- and multicycle umIF in human tissue samples and mouse models, revealing epithelial, stromal, immune, and epigenetic organization in normal and disease contexts. umIF provides a versatile and accessible method for scalable spatial proteomics, lowering barriers to adoption in both research and clinical laboratories.

Indexed as

Fluorescent Antibody TechniqueProteomicsAnimalsAntibodiesFluorescent DyesHumansMiceAntibodiesFluorescent Dyescyclic immunofluorescencehost‐independent labelingimmunofluorescence stainingspatial proteomics

Identifiers

PMID42305051
PMCPMC13375603

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.