Evidence map›Paper›PMID 42303864›Full record

ArticleNature aging2026

Nuclear export of R-loop by the DDX1 and XPO1 complex promotes senescence-associated secretory phenotype and inflammaging.

Xue Hao, Bo Zhao, Qingqing Yan, Mitsutake Yano, Ayumu Matsuoka, Yuan Qi, Liping Liao, Rafal J Zielinski, Hsin-Yao Tang, Andrew V Kossenkov and 3 more

Abstract read
In one paragraph

Article in Nature aging, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Xue HaoDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0003-4138-1447
Bo ZhaoImmunology, Microenvironment and Metastasis Program, The Wistar Institute, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-1000-8239
Qingqing YanGene Expression and Regulation Program, The Wistar Institute, Philadelphia, PA, USA.
Mitsutake YanoDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0002-4436-838X
Ayumu MatsuokaDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Yuan QiDepartment of Bioinformatics & Computational Biology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0001-9718-7593
Liping LiaoDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Rafal J ZielinskiDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Hsin-Yao TangMolecular and Cellular Oncogenesis Program, The Wistar Institute, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-1838-018X
Andrew V KossenkovGene Expression and Regulation Program, The Wistar Institute, Philadelphia, PA, USA.
M Anna ZalDepartment of Epigenetics and Molecular Carcinogenesis, University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID http://orcid.org/0000-0002-1015-3954
Kavitha SarmaGene Expression and Regulation Program, The Wistar Institute, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-3045-210X
Rugang ZhangDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, TX, USA. rzhang11@mdanderson.org.ORCID http://orcid.org/0000-0002-7255-2360

Funding

Project 4: Chromatin basis of cellular senescence and tissue agingP01AG092325 · NIA · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 2026 to 2026
$5.6M
Advancing Cancer Research through Comprehensive Proteomics and Metabolomics AnalysesR50CA221838 · NCI · WISTAR INSTITUTE · PI Hsin-Yao Tang · 2017 to 2026
$2.1M
Signaling basis of senescence-associated secretory phenotype and its implications in epithelial ovarian cancerR01CA276569 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Rugang Zhang · 2023 to 2026
$2.1M
ADNP mechanisms in R-loop regulation during differentiationR01GM143229 · NIGMS · WISTAR INSTITUTE · PI SARMA, KAVITHA · 2022 to 2025
$1.7M
Developing a genomic toolkit to identify RNAs within non-canonical DNA structuresR21GM147533 · NIGMS · WISTAR INSTITUTE · PI SARMA, KAVITHA · 2022 to 2023
$501k
Cancer Prevention and Research Institute of Texas (Cancer Prevention Research Institute of Texas) RR230005NCI NIH HHS R01 CA276569NCI NIH HHS R50 CA221838NIA NIH HHS P01 AG092325United States Department of Defense | United States Army | Army Medical Command | Congressionally Directed Medical Research Programs (CDMRP) OC220011U.S. Department of Health & Human Services | National Institutes of Health (NIH) P01AG092325U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01CA276569U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM143229U.S. Department of Health & Human Services | National Institutes of Health (NIH) R21GM147533
6 · The paper itself

Abstract

Cellular senescence contributes to inflammaging in part through the senescence-associated secretory phenotype (SASP). R-loops, three-stranded nucleic acid structures, contribute to innate immune response in cancers; however, the role of R-loops in senescence and inflammaging remains largely unknown. Here we show that nuclear-derived cytoplasmic R-loops promote the SASP and inflammaging. We detect an accumulation of nuclear-derived R-loops in the cytoplasm of senescent cells with an enrichment in alpha-satellite repeats. These cytoplasmic R-loops localize into cytoplasmic chromatin fragments (CCFs) and activate the cGAS-STING innate immune pathway to drive the SASP. We identify the exportin-1 (XPO1)-DEAD-Box helicase 1 (DDX1) complex as essential for the nuclear export of R-loops and their subsequent localization into CCFs. Inhibition of XPO1 with KPT-330 suppresses nuclear R-loop export and its localization into CCFs, attenuates the SASP, mitigates age-associated inflammation and extends healthspan. These findings reveal nuclear export of R-loops as a potential target for suppressing age-associated inflammation.

Indexed as

Cellular SenescenceDEAD-box RNA HelicasesInflammationKaryopherinsReceptors, Cytoplasmic and NuclearSenescence-Associated Secretory PhenotypeActive Transport, Cell NucleusAnimalsCell NucleuscGAS-STING Signaling PathwayChromatinCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseExportin 1 ProteinHumansImmunity, InnateNucleotidyltransferasesChromatinCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseDDX1 protein, humanDEAD-box RNA HelicasesExportin 1 ProteinKaryopherinsNucleotidyltransferasesReceptors, Cytoplasmic and Nuclear

Identifiers

PMID42303864
PMCPMC13279264

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.