ArticleNature aging2026
Nuclear export of R-loop by the DDX1 and XPO1 complex promotes senescence-associated secretory phenotype and inflammaging.
Xue Hao, Bo Zhao, Qingqing Yan, Mitsutake Yano, Ayumu Matsuoka, Yuan Qi, Liping Liao, Rafal J Zielinski, Hsin-Yao Tang, Andrew V Kossenkov and 3 more
Abstract read
In one paragraphArticle in Nature aging, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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1 · What the graph read from itWhat it found
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4 · The recordCorrections and comments
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5 · Who and what moneyAuthors and funding
13 authors.
Qingqing YanGene Expression and Regulation Program, The Wistar Institute, Philadelphia, PA, USA.
Ayumu MatsuokaDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Liping LiaoDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Rafal J ZielinskiDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Andrew V KossenkovGene Expression and Regulation Program, The Wistar Institute, Philadelphia, PA, USA.
Funding
Project 4: Chromatin basis of cellular senescence and tissue agingP01AG092325 · NIA · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 2026 to 2026
$5.6MAdvancing Cancer Research through Comprehensive Proteomics and Metabolomics AnalysesR50CA221838 · NCI · WISTAR INSTITUTE · PI Hsin-Yao Tang · 2017 to 2026
$2.1MSignaling basis of senescence-associated secretory phenotype and its implications in epithelial ovarian cancerR01CA276569 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Rugang Zhang · 2023 to 2026
$2.1MADNP mechanisms in R-loop regulation during differentiationR01GM143229 · NIGMS · WISTAR INSTITUTE · PI SARMA, KAVITHA · 2022 to 2025
$1.7MDeveloping a genomic toolkit to identify RNAs within non-canonical DNA structuresR21GM147533 · NIGMS · WISTAR INSTITUTE · PI SARMA, KAVITHA · 2022 to 2023
$501kCancer Prevention and Research Institute of Texas (Cancer Prevention Research Institute of Texas) RR230005NCI NIH HHS R01 CA276569NCI NIH HHS R50 CA221838NIA NIH HHS P01 AG092325United States Department of Defense | United States Army | Army Medical Command | Congressionally Directed Medical Research Programs (CDMRP) OC220011U.S. Department of Health & Human Services | National Institutes of Health (NIH) P01AG092325U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01CA276569U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM143229U.S. Department of Health & Human Services | National Institutes of Health (NIH) R21GM147533
6 · The paper itselfAbstract
Cellular senescence contributes to inflammaging in part through the senescence-associated secretory phenotype (SASP). R-loops, three-stranded nucleic acid structures, contribute to innate immune response in cancers; however, the role of R-loops in senescence and inflammaging remains largely unknown. Here we show that nuclear-derived cytoplasmic R-loops promote the SASP and inflammaging. We detect an accumulation of nuclear-derived R-loops in the cytoplasm of senescent cells with an enrichment in alpha-satellite repeats. These cytoplasmic R-loops localize into cytoplasmic chromatin fragments (CCFs) and activate the cGAS-STING innate immune pathway to drive the SASP. We identify the exportin-1 (XPO1)-DEAD-Box helicase 1 (DDX1) complex as essential for the nuclear export of R-loops and their subsequent localization into CCFs. Inhibition of XPO1 with KPT-330 suppresses nuclear R-loop export and its localization into CCFs, attenuates the SASP, mitigates age-associated inflammation and extends healthspan. These findings reveal nuclear export of R-loops as a potential target for suppressing age-associated inflammation.
Indexed as
Cellular SenescenceDEAD-box RNA HelicasesInflammationKaryopherinsReceptors, Cytoplasmic and NuclearSenescence-Associated Secretory PhenotypeActive Transport, Cell NucleusAnimalsCell NucleuscGAS-STING Signaling PathwayChromatinCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseExportin 1 ProteinHumansImmunity, InnateNucleotidyltransferasesChromatinCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseDDX1 protein, humanDEAD-box RNA HelicasesExportin 1 ProteinKaryopherinsNucleotidyltransferasesReceptors, Cytoplasmic and Nuclear
Identifiers
PMID42303864
PMCPMC13279264
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