Evidence map›Paper›PMID 42302290›Full record

ArticlePlant physiology2026

Phytochrome-interacting factors integrate environmental signals to regulate tomato growth and development.

Srinivas Kunta, Abigail Aryee-Atta, Yardena Dahan, Zeenu Singh, Shlomi Aharon, Asher Pasha, Ido Nir, Ran N Lati, Nicholas J Provart, Yogev Burko

Abstract read
In one paragraph

Article in Plant physiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Srinivas KuntaThe Institute of Plant Sciences, Agricultural Research Organization (ARO), Volcani Center, Rishon LeZion 7505101, Israel.ORCID 0000-0003-2059-5251
Abigail Aryee-AttaThe Institute of Plant Sciences, Agricultural Research Organization (ARO), Volcani Center, Rishon LeZion 7505101, Israel.ORCID 0009-0005-2726-7455
Yardena DahanThe Institute of Plant Sciences, Agricultural Research Organization (ARO), Volcani Center, Rishon LeZion 7505101, Israel.ORCID 0000-0003-2928-1603
Zeenu SinghThe Institute of Plant Sciences, Agricultural Research Organization (ARO), Volcani Center, Rishon LeZion 7505101, Israel.ORCID 0000-0003-1924-0728
Shlomi AharonThe Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Hebrew University, Rehovot 7610001, Israel.
Asher PashaDepartment of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, ON M5S 3B2, Canada.ORCID 0000-0002-9315-0520
Ido NirThe Institute of Plant Sciences, Agricultural Research Organization (ARO), Volcani Center, Rishon LeZion 7505101, Israel.ORCID 0000-0002-6223-6700
Ran N LatiDepartment of Plant Pathology and Weed Research, Agricultural Research Organization (ARO), Volcani Institute, Newe Ya'ar Research Center, RamatYishay 30095, Israel.ORCID 0000-0003-0999-338X
Nicholas J ProvartDepartment of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, ON M5S 3B2, Canada.ORCID 0000-0001-5551-7232
Yogev BurkoThe Institute of Plant Sciences, Agricultural Research Organization (ARO), Volcani Center, Rishon LeZion 7505101, Israel.ORCID 0000-0002-3607-6280

Funding

Israeli Ministry of Agriculture and Rural Development 20-01-0292Israel Science Foundation 1750/25
6 · The paper itself

Abstract

Plants respond to environmental cues, such as light and temperature, which regulate their growth and development. In the model plant Arabidopsis (Arabidopsis thaliana), PHYTOCHROME-INTERACTING FACTORS (PIFs) are central regulators of both shade avoidance and thermomorphogenesis. However, their functional roles in crop species are less well known. Here, we generated a tomato (Solanum lycopersicum) mutant lacking all 8 known PIF genes (slpifo), to investigate their roles under controlled and field conditions. We showed that SlPIFs are essential for shade responses, while thermomorphogenesis-induced elongation is largely independent of SlPIFs, revealing species-specific differences in regulatory mechanisms. Under low-red to far-red light (low R/FR), slpifo plants failed to exhibit characteristic wild-type responses, including shoot elongation, expansion and thinning of leaf blades, and depletion of leaf chlorophyll. We further identified redundant roles for SlPIF1a, SlPIF4, and SlPIF8a in regulating stem elongation and chlorophyll depletion in response to low R/FR. In addition, slpifo plants exhibited reduced overall growth, fruit size, fruit number, and seed dormancy under field conditions, highlighting broader roles for SlPIFs beyond neighbor detection. These findings provide insights into how PIFs orchestrate organ-specific developmental plasticity in tomato, offering avenues to optimize light responsiveness for crop improvement.

Indexed as

Basic Helix-Loop-Helix ProteinsPhytochromePlant ProteinsSolanum lycopersicumGene Expression Regulation, PlantLightPlant LeavesBasic Helix-Loop-Helix ProteinsPhytochromePlant Proteins

Identifiers

PMID42302290
PMCPMC13360281

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.