Evidence map›Paper›PMID 42301816›Full record

ArticleSTAR protocols2026

Protocol to study direct (de)phosphorylation events on a proteome-wide scale using on-bead in vitro enzyme assays.

Melanie Brunner, Zehan Hu, Marco Caligaris, Michael Stumpe, Claudio De Virgilio, Jörn Dengjel

Abstract read
In one paragraph

Article in STAR protocols, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Melanie BrunnerDepartment of Biology, University of Fribourg, Chemin du Musée 10, 1700 Fribourg, Switzerland.
Zehan HuDepartment of Biology, University of Fribourg, Chemin du Musée 10, 1700 Fribourg, Switzerland. Electronic address: zehan.hu@hotmail.com.
Marco CaligarisDepartment of Biology, University of Fribourg, Chemin du Musée 10, 1700 Fribourg, Switzerland.
Michael StumpeDepartment of Biology, University of Fribourg, Chemin du Musée 10, 1700 Fribourg, Switzerland.
Claudio De VirgilioDepartment of Biology, University of Fribourg, Chemin du Musée 10, 1700 Fribourg, Switzerland.
Jörn DengjelDepartment of Biology, University of Fribourg, Chemin du Musée 10, 1700 Fribourg, Switzerland. Electronic address: joern.dengjel@unifr.ch.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein phosphorylation regulates essential cellular processes, yet probing kinase and phosphatase activities in native contexts remains challenging. Here, we present a protocol to study direct (de)phosphorylation events on a proteome-wide scale using on-bead in vitro kinase and phosphatase assays (OBIKA/OBIPhA). We describe steps for employing active enzyme complexes and identifying direct substrates and regulated phosphosites using mass spectrometry. Compared to traditional in vitro approaches, this protocol operates under native conditions to preserve protein interactions and modifications in eukaryotic cell systems. For complete details on the use and execution of this protocol, please refer to Brunner et al.

Indexed as

Cell BiologyMolecular BiologyProtein BiochemistryProteomicsSystems biology

Identifiers

PMID42301816
PMCPMC13292557

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.