Evidence map›Paper›PMID 42299915›Full record

ArticleGenetics2026

Mount Fuji's stubby peak: the genotypic density of additive landscapes near maximal fitness.

Justin B Kinney

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Article in Genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

1 author.

Justin B KinneySimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, United States.ORCID 0000-0003-1897-3778

Funding

A unified quantitative modeling strategy for multiplex assays of variant effectR01HG011787 · NHGRI · COLD SPRING HARBOR LABORATORY · PI JUSTIN B. KINNEY · 2022 to 2026
$4.1M
Graphical Processing Units and a Large-Memory Compute Node for Applications in Genomics, Neuroscience, and Structural BiologyS10OD028632 · OD · COLD SPRING HARBOR LABORATORY · PI SIEPEL, ADAM CHARLES · 2020 to 2020
$437k
NIH HHS R01HG011787NIH HHS S10OD028632
6 · The paper itself

Abstract

Additive fitness landscapes-also called Mount Fuji landscapes-are the simplest and most widely used models of sequence-function relationships. As such, they play essential roles across multiple areas of biology, including evolutionary theory, quantitative genetics, gene regulation, and protein science. One of the most basic properties of any fitness landscape is its genotypic density-the number of sequences near a given fitness value. Understanding this density is especially important near fitness peaks, as it quantifies the supply of high-fitness genotypes. Here I study the genotypic density of additive landscapes near fitness peaks. Although this density is well known to be approximately Gaussian near the middle of the fitness range, its behavior near maximal fitness has not been reported. I begin by deriving a saddle-point approximation that accurately describes the genotypic density of additive landscapes over virtually the entire fitness range. I then show that the log of this density follows a power law near maximal fitness, with the exponent determined by how much the best allele at each position outperforms its nearest competitor. This power-law behavior holds over a substantial fraction of fitness values, besting the Gaussian approximation on both simulated and empirical landscapes across roughly a quarter to a third of the fitness range. Under certain conditions this behavior also extends to globally epistatic landscapes (defined as nonlinear functions of one or more additive traits), though with a reduced range of validity. These findings advance our understanding of one of the most fundamental models of sequence-function relationships. In particular, they reveal that the uppermost reaches of Mount Fuji landscapes, rather than being sharply peaked, are actually quite stubby.

Indexed as

additive modelsfitness landscapesgenotypic densityglobal epistasissaddle-point approximation

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.