Evidence map›Paper›PMID 42297812›Full record

ArticleNature communications2026

Genetic and pharmacological inactivation of peptidoglycan remodeling increases antibiotic susceptibility of vancomycin-resistant Enterococcus faecium.

Kyong T Fam, Pavan Kumar Chodisetti, Zifei Wang, Joshua A Homer, Christopher J Smedley, Seiya Kitamura, Benjamin Silva, Yijun Xiong, Althea Hansel-Harris, Matthew Holcomb and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Kyong T Fam *Department of Immunology and Microbiology, Scripps Research; La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-4877-5679
Pavan Kumar Chodisetti *Department of Immunology and Microbiology, Scripps Research; La Jolla, CA, USA.
Zifei WangCancer Center, Cold Spring Harbor Laboratory; Cold Spring Harbor, NY, USA.
Joshua A HomerCancer Center, Cold Spring Harbor Laboratory; Cold Spring Harbor, NY, USA.
Christopher J SmedleyLa Trobe Institute for Molecular Science, La Trobe University, Science Dr., Bundoora, Melbourne, VIC, Australia.ORCID http://orcid.org/0000-0001-5110-2574
Seiya KitamuraDepartment of Integrative Structural & Computational Biology, Scripps Research; La Jolla, California, USA.
Benjamin SilvaDepartment of Integrative Structural & Computational Biology, Scripps Research; La Jolla, California, USA.
Yijun XiongDepartment of Chemistry, Scripps Research; La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-6348-9649
Althea Hansel-HarrisDepartment of Integrative Structural & Computational Biology, Scripps Research; La Jolla, California, USA.
Matthew HolcombDepartment of Integrative Structural & Computational Biology, Scripps Research; La Jolla, California, USA.ORCID http://orcid.org/0000-0002-8409-4344
Simeon BabarindeDepartment of Integrative Structural & Computational Biology, Scripps Research; La Jolla, California, USA.ORCID http://orcid.org/0000-0001-5603-4769
Adrianna M TurnerDepartment of Immunology and Microbiology, Scripps Research; La Jolla, CA, USA.
Daria Van TyneDivision of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0001-7284-0103
Ian A WilsonDepartment of Integrative Structural & Computational Biology, Scripps Research; La Jolla, California, USA.ORCID http://orcid.org/0000-0002-6469-2419
Stefano ForliDepartment of Integrative Structural & Computational Biology, Scripps Research; La Jolla, California, USA.ORCID http://orcid.org/0000-0002-5964-7111
Benjamin F CravattDepartment of Chemistry, Scripps Research; La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5330-3492
Donghyun ParkDepartment of Integrative Structural & Computational Biology, Scripps Research; La Jolla, California, USA.ORCID http://orcid.org/0000-0003-2048-6004
Dennis W WolanDepartment of Integrative Structural & Computational Biology, Scripps Research; La Jolla, California, USA.ORCID http://orcid.org/0000-0001-9879-8353
John E MosesCancer Center, Cold Spring Harbor Laboratory; Cold Spring Harbor, NY, USA. moses@cshl.edu.ORCID http://orcid.org/0000-0003-2162-3234
Howard C HangDepartment of Immunology and Microbiology, Scripps Research; La Jolla, CA, USA. hhang@scripps.edu.ORCID http://orcid.org/0000-0003-4053-5547

Funding

AutoDock Suite: Next Generation Environment for Drug DesignR01GM069832 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI FORLI, STEFANO · 2004 to 2025
$10.9M
High-speed direct detector for cryo electron microscopyS10OD032467 · OD · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2022 to 2022
$600k
Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R01GM069832Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) S10OD032467NIGMS NIH HHS R01 GM069832NIH HHS S10 OD032467
6 · The paper itself

Abstract

Vancomycin-resistant Enterococcus faecium (VREfm) is a leading cause of healthcare-associated infections globally and demands new approaches for treatment. Here we show that genetic and pharmacological inactivation of a highly conserved NlpC/P60 peptidoglycan hydrolase, secreted antigen A (SagA), enhanced vancomycin susceptibility of VREfm ex vivo and in vivo. Notably, genetic deletion of sagA impaired VREfm peptidoglycan remodeling, growth and increased the activity of vancomycin. We then identified first-in-class covalent NlpC/P60 peptidoglycan hydrolase inhibitors and demonstrated that pharmacological inactivation of SagA activity also impaired peptidoglycan remodeling and increased the efficacy of vancomycin across genetically distinct VREfm clinical isolates. Our study reveals peptidoglycan hydrolases are druggable targets whose inactivation improves the efficacy of vancomycin against VREfm.

Indexed as

Anti-Bacterial AgentsEnterococcus faeciumN-Acetylmuramoyl-L-alanine AmidasePeptidoglycanVancomycinVancomycin ResistanceVancomycin-Resistant EnterococciAnimalsBacterial ProteinsHumansMicrobial Sensitivity TestsAnti-Bacterial AgentsBacterial ProteinsN-Acetylmuramoyl-L-alanine AmidasePeptidoglycanVancomycin

Identifiers

PMID42297812
PMCPMC13416122

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.