Evidence map›Paper›PMID 42293346›Full record

ArticleOphthalmology science2026

Gene-Environment Interaction Loci Associated with Refractive Error: SCAMPI Analysis.

Xi He, Louise Terry, Jeremy A Guggenheim, UK Biobank Eye and Vision Consortium

Abstract read
In one paragraph

Article in Ophthalmology science, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

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No citing paper in PubMed yet.

4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

4 authors.

Xi HeSchool of Optometry & Vision Sciences, Cardiff University, Cardiff, United Kingdom.
Louise TerrySchool of Optometry & Vision Sciences, Cardiff University, Cardiff, United Kingdom.
Jeremy A GuggenheimSchool of Optometry & Vision Sciences, Cardiff University, Cardiff, United Kingdom.
UK Biobank Eye and Vision Consortium

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: To compare the performance of a novel method for identifying candidate gene-environment interaction loci, Scalable Cauchy Aggregate test using Multiple Phenotypes to test Interactions (SCAMPI) (doi:10.1101/2024.09.10.612314v1), to widely used existing methods, Levene's test and conditional quantile regression (CQR). The 3 methods were evaluated for refractive error, a trait known to exhibit widespread gene-environment interaction effects. Design: A cohort study; a genome-wide association study to investigate variance heterogeneity of refractive error. Participants: A discovery sample of 77 880 UK Biobank participants with records of both refractive error and age of onset of spectacle wear (AOSW) and a validation sample of 257 265 UK Biobank participants with known AOSW. Methods: SCAMPI, Levene's tests, and CQR were applied in the discovery sample. Variance quantitative trait loci (vQTLs) identified using SCAMPI were assessed in the independent validation sample. The SCAMPI vQTLs were further assessed for evidence of genotype-by-education interaction or gene-gene interaction, using linear regression. Main Outcome Measures: Genetic variance heterogeneity associated with refractive error (phenotypic variance differences across genotypes). Results: SCAMPI identified 15 independent vQTLs with Conclusions: The SCAMPI outperformed Levene's test and CQR in identifying candidate gene-environment interaction loci associated with refractive error. Our results suggest that a variant in the Financial Disclosures: Proprietary or commercial disclosure may be found in the Footnotes and Disclosures at the end of this article.

Indexed as

Gene-environment interactionMyopiaRefractive errorvGWASvQTL

Identifiers

PMID42293346
PMCPMC13255065

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.