Evidence map›Paper›PMID 42293129›Full record

ArticleSynthetic biology (Oxford, England)2026

A CURE for synthetic regulation of gene expression: rapid screening of guide RNA efficacy as a framework for enabling undergraduate research in plant synthetic biology.

Tawni Bull, Liz Carlsen, Noah Hoglund, Josh Blarr, Makenzie Ciernia, Hannah Daughtrey, Keana Gulnac, Zane Kathan, Ben Labovitz, Ryan Lonergan and 13 more

Abstract read
In one paragraph

Article in Synthetic biology (Oxford, England), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Tawni BullDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.ORCID https://orcid.org/0000-0001-9382-1075
Liz CarlsenDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Noah HoglundDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Josh BlarrDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Makenzie CierniaDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Hannah DaughtreyDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Keana GulnacDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Zane KathanDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Ben LabovitzDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Ryan LonerganDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Mira McDermottDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Andrew MedinaDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Zoey MikolDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Zeke MillerDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Kyndal PrahlDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Chloe RifaiDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Emma SchremsDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Futa ShinkawaDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Jessie SummerfieldDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Ethan ThevarajahDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Skylar WagnerDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Trenton ZimmermanDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.
Arjun KhakharDepartment of Biology, Colorado StateUniversity, Fort Collins, CO 80521,  United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Course-based Undergraduate Research Experiences (CUREs) have emerged as a transformative approach to science education, expanding access to authentic research opportunities beyond the traditional undergraduate research assistant (URA) training. By embedding research into a curriculum, CUREs engage a broad and diverse population of students in a classroom environment that emphasizes experimental design, data analysis, and scientific communication. However, this has been difficult to develop for fields such as plant synthetic biology due to the long timescales of plant transformation. One avenue around this problem is to utilize a recent innovation that enables high throughput and rapid screening of guide RNA (gRNA) efficacy by leveraging viral-based delivery of gRNAs. In this work, we develop and validate a CURE with undergraduate students at Colorado State University (CSU). Students worked in teams to design and test efficacy of gRNAs targeting a Cas9-based transcriptional repressor to different regions of the promoters of the three

Indexed as

CUREeducationGID1plant biologysynthetic biology

Identifiers

PMID42293129
PMCPMC13262530

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.