Evidence map›Paper›PMID 42293025›Full record

ReviewFrontiers in plant science2026

Big data approaches to understanding gene regulatory networks in the shoot apical meristem and

Jack H Carpenter, Emily L Darby, Tamara Lechon, Simon Scofield

Abstract readReview
In one paragraph

Review in Frontiers in plant science, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jack H CarpenterSchool of Biosciences, Cardiff University, Cardiff, United Kingdom.
Emily L DarbySchool of Biosciences, Cardiff University, Cardiff, United Kingdom.
Tamara LechonSchool of Biosciences, Cardiff University, Cardiff, United Kingdom.
Simon ScofieldSchool of Biosciences, Cardiff University, Cardiff, United Kingdom.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene regulatory networks (GRNs) regulate the development and function of the shoot apical meristem (SAM) in higher plants by controlling the division, differentiation, and developmental fate of meristematic cells. These GRNs are composed of transcription factors and their target genes, and are also coordinated by phytohormones, microRNAs, and epigenetic regulators. With the increasing integration of multiomic and single cell approaches, large amounts of data relating to SAM regulation have been collated, providing insight to the interactions between many GRN components. Whilst many well-established experimental approaches such as gene knockouts, transgene overexpression and reporter gene imaging still heavily contribute to the understanding of these networks, the use of large-scale datasets to construct GRNs has driven novel hypothesis generation and has been used to predict network topology and component interactions. Many of these components and interactions have subsequently been explored

Indexed as

bioinformaticsgene regulatory network (GRN)multiomicsorganogenesisplant developmentregenerationshoot apical meristem (SAM)transcriptomics

Identifiers

PMID42293025
PMCPMC13253680

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.