Evidence map›Paper›PMID 42290293›Full record

ArticleDevelopment (Cambridge, England)2026

SIX1 branchio-oto-renal syndrome variants have different effects on embryonic craniofacial gene expression and cartilage formation.

Kelsey Coppenrath, Nikko-Ideen Shaidani, Thomas Naert, Himani D Majumdar, Marko Horb, Soeren S Lienkamp, Steven L Klein, Sally A Moody

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kelsey CoppenrathEugene Bell Center for Regenerative Biology and Tissue Engineering and National Xenopus Resource, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Nikko-Ideen ShaidaniEugene Bell Center for Regenerative Biology and Tissue Engineering and National Xenopus Resource, Marine Biological Laboratory, Woods Hole, MA 02543, USA.ORCID 0009-0004-7406-2017
Thomas NaertInstitute of Anatomy, University of Zurich, 8057 Zurich, Switzerland.
Himani D MajumdarDepartment of Anatomy & Cell Biology, George Washington University School of Medicine and Health Sciences, Washington, DC 20037, USA.
Marko HorbEugene Bell Center for Regenerative Biology and Tissue Engineering and National Xenopus Resource, Marine Biological Laboratory, Woods Hole, MA 02543, USA.
Soeren S LienkampInstitute of Anatomy, University of Zurich, 8057 Zurich, Switzerland.ORCID 0000-0003-2963-6865
Steven L KleinDepartment of Anatomy & Cell Biology, George Washington University School of Medicine and Health Sciences, Washington, DC 20037, USA.ORCID 0000-0002-0616-2583
Sally A MoodyDepartment of Anatomy & Cell Biology, George Washington University School of Medicine and Health Sciences, Washington, DC 20037, USA.ORCID 0000-0003-4192-1087

Funding

Resource CoreP40OD010997 · OD · MARINE BIOLOGICAL LABORATORY · PI Marko E Horb · 2012 to 2026
$13.1M
Xenopus Mutant ResourceR24OD030008 · OD · MARINE BIOLOGICAL LABORATORY · PI Marko E Horb · 2020 to 2026
$6.0M
Six1 Co-factors in Craniofacial DevelopmentR01DE026434 · NIDCR · GEORGE WASHINGTON UNIVERSITY · PI ALFANDARI, DOMINIQUE R, MOODY, SALLY ANN · 2018 to 2022
$1.9M
Gene Regulation of Cranial Sensory Placode DevelopmentR01DE022065 · NIDCR · GEORGE WASHINGTON UNIVERSITY · PI MOODY, SALLY ANN · 2011 to 2015
$1.7M
Bijzonder Onderzoeksfonds UGent 01P06323European Research Council 804474Fonds Wetenschappelijk Onderzoek 1294725NGeorge Washington UniversityH2020 European Research Council 804474H2020 Marie Sklodowska-Curie Actions 891127H2020 Marie Skłodowska-Curie Actions 891127Horizon 2020NIDCR NIH HHS R01 DE022065NIDCR NIH HHS R01 DE026434NIH HHS P40 OD010997NIH HHS R01 DE022065NIH HHS R01 DE026434NIH HHS R24 OD030008ODCDC CDC HHS P40 OD010997ODCDC CDC HHS R24 OD030008Research Foundation Flanders 1294725NSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 310030_189102Swiss National Science Foundation 310031_189102Theiler-Haag Foundation
6 · The paper itself

Abstract

SIX1 variants underlying branchio-oto-renal syndrome occur in the SIX domain (SD) or homeodomain (HD). We tested whether different variants - V17E (SD), Y129C (HD) - cause distinct developmental phenotypes in Xenopus embryos with reduced Six1 in comparison to wild-type Six1 (Six1WT). In Six1 morphants, Six1WT restored neural crest and preplacodal gene expression; V17E restored foxd3 and irx1 better than Y129C, and Y129C restored sox11 better than V17E. In six1-null otic vesicles, Six1WT partially restored tbx1 and sobp, V17E was less effective and Y129C was least effective; all three restored dlx5. In six1 heterozygotes, Six1WT and Y129C had similar pleiotropic effects on tbx1, whereas V17E had no effect; Six1WT restored dlx5 expression, V17E was less effective and Y129C was most deficient. In six1-null tadpoles, reduced cranial cartilage volume and individual cartilage abnormalities were rescued by Six1WT, less so by V17E and not by Y129C. In heterozygotes and wild types, Y129C caused a higher frequency of abnormal cartilages compared to Six1WT or V17E. Thus, variants with different functional deficits have distinguishable effects in both nulls and heterozygotes on the formation of the tissues affected in branchio-oto-renal syndrome.

Indexed as

Branchio-Oto-Renal SyndromeCartilageGene Expression Regulation, DevelopmentalHomeodomain ProteinsSkullXenopus ProteinsAnimalsCraniofacial AbnormalitiesIntracellular Signaling Peptides and ProteinsNeural CrestNuclear ProteinsPhenotypeProtein Tyrosine PhosphatasesXenopus laevisEya1 protein, XenopusHomeodomain ProteinsIntracellular Signaling Peptides and ProteinsNuclear ProteinsProtein Tyrosine PhosphatasesSix1 protein, XenopusXenopus ProteinsBranchio-oto-renal syndromeCranial cartilageEya1Neural crestOtic vesiclePreplacodal ectoderm

Identifiers

PMID42290293
PMCPMC13347299

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.