Evidence map›Paper›PMID 42289897›Full record

ArticleChemPlusChem2026

CALPUCK: An Open Python Tool for Cremer-Pople Ring Puckering Analysis Including a New 2D Mapping of Seven-Membered Rings.

Filippo Protti, Lucio Toma, Giuseppe Zanoni, Emanuele Casali

Abstract read
In one paragraph

Article in ChemPlusChem, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Filippo ProttiDepartment of Chemistry, University of Pavia, Pavia, Italy.
Lucio TomaDepartment of Chemistry, University of Pavia, Pavia, Italy.ORCID https://orcid.org/0000-0001-8916-7445
Giuseppe ZanoniDepartment of Chemistry, University of Pavia, Pavia, Italy.ORCID https://orcid.org/0000-0003-1530-9409
Emanuele CasaliDepartment of Chemistry, University of Pavia, Pavia, Italy.ORCID https://orcid.org/0000-0001-7501-5213

Funding

Regione Lombardia BRAVE (PR FESR 2021-2027)
6 · The paper itself

Abstract

Ring puckering is a central conformational phenomenon that strongly influences the structure and reactivity of cyclic and heterocyclic molecules, with particular relevance to carbohydrate chemistry and stereoelectronic effects. Ring puckering represents a critical conformational phenomenon in organic chemistry, where cyclic molecules deviate from planarity through out-of-plane bending motions to minimize steric and electronic strain. To make quantitative puckering analysis more accessible, this work presents a free, open-source Python tool that computes Cremer-Pople puckering parameters for five-, six- and seven-membered rings from standard .xyz coordinates and produces intuitive two-dimensional visualizations of amplitude and phase. The implementation centers on vectorized projections onto sinusoidal basis functions, special-case handling for different ring sizes, and interactive selection of ring atoms; it emphasizes clarity, speed, and explicit support for seven-membered systems often neglected due to the difficulty to represent toroidal landscape. Validation and discussion illustrate how the tool maps canonical envelope, twist, chair, boat, and higher-dimensional pseudorotation landscapes onto readable plots, enabling rapid classification of conformers and interpretation of dynamical motifs. The program provides a practical and accessible implementation for the analysis and visualization of ring conformations based on puckering coordinates.

Indexed as

7‐membered ringscodeconformerscyclespuckering

Identifiers

PMID42289897
PMCPMC13266092

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.