Evidence map›Paper›PMID 42289175›Full record

ArticleHuman immunology2026

Investigation of human leukocyte antigen alleles as risk factors for cryptococcal disease in Ugandan individuals with HIV.

Caleb P Skipper, Biyue Dai, Bruno Borges, Danillo G Augusto, Elliot Gerlach, Asmus Tukundane, Kiiza Tadeo, Katelyn A Pastick, Darlisha A Williams, Mable Kabahubya and 6 more

Abstract read
In one paragraph

Article in Human immunology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Caleb P SkipperUniversity of Minnesota, Minneapolis, MN, USA; Infectious Diseases Institute, Makerere University, Kampala, Uganda. Electronic address: skipp015@umn.edu.
Biyue DaiUniversity of Minnesota, Minneapolis, MN, USA.
Bruno BorgesVirginia Tech, Blacksburg, VA, USA.
Danillo G AugustoUniversity of California San Francisco, CA, USA; University of North Carolina - Charlotte, Charlotte, NC, USA.
Elliot GerlachUniversity of Minnesota, Minneapolis, MN, USA.
Asmus TukundaneInfectious Diseases Institute, Makerere University, Kampala, Uganda.
Kiiza TadeoInfectious Diseases Institute, Makerere University, Kampala, Uganda.
Katelyn A PastickMassachusetts General Hospital, Boston, MA, USA.
Darlisha A WilliamsUniversity of Minnesota, Minneapolis, MN, USA.
Mable KabahubyaInfectious Diseases Institute, Makerere University, Kampala, Uganda.
Radha RajasinghamUniversity of Minnesota, Minneapolis, MN, USA.
Elizabeth NalintyaInfectious Diseases Institute, Makerere University, Kampala, Uganda.
David B MeyaUniversity of Minnesota, Minneapolis, MN, USA; Infectious Diseases Institute, Makerere University, Kampala, Uganda.
David R BoulwareUniversity of Minnesota, Minneapolis, MN, USA.
Jill HollenbachUniversity of California San Francisco, CA, USA.
Kirsten NielsenUniversity of Minnesota, Minneapolis, MN, USA; Virginia Tech, Blacksburg, VA, USA. Electronic address: kirstennielsen@vt.edu.

Funding

University of Minnesota Clinical and Translational Science Institute (UMN CTSI)UL1TR002494 · NCATS · UNIVERSITY OF MINNESOTA · PI BLAZAR, BRUCE R, WEISDORF, DANIEL J · 2018 to 2022
$34.9M
NPGH LEADERs YR12: OBSSR (Greenberg, Ngwafong Mukere) & NIBIB (Lee)D43TW009345 · FIC · UNIVERSITY OF WASHINGTON · PI Dibyadyuti Datta, Chandy C. John · 2017 to 2026
$15.2M
Improving Diagnostics and Neurocognitive Outcomes in HIV/AIDS-related MeningitisR01NS086312 · NINDS · UNIVERSITY OF MINNESOTA · PI David R Boulware, David Bisagaya Meya · 2013 to 2026
$8.3M
Institutional Career Development CoreKL2TR002492 · NCATS · UNIVERSITY OF MINNESOTA · PI INGBAR, DAVID H · 2018 to 2022
$6.3M
Genomic Research Capacity Building for Cryptococcosis Translational StudiesR01NS118538 · NINDS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI Joel Bazira, David Bisagaya Meya · 2020 to 2026
$3.4M
Operational Research for Cryptococcal Antigen Screening (ORCAS) of HIV PatientsU01AI125003 · NIAID · UNIVERSITY OF MINNESOTA · PI BOULWARE, DAVID R, MEYA, DAVID BISAGAYA · 2016 to 2020
$3.4M
Continuum of Immune Responses to Cryptococcus neoformansR01AI176922 · NIAID · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI Kirsten Nielsen · 2023 to 2026
$3.0M
Encochleated Oral Amphotericin for Cryptococcal Meningitis TrialR01NS110519 · NINDS · UNIVERSITY OF MINNESOTA · PI BOULWARE, DAVID R, MEYA, DAVID BISAGAYA · 2019 to 2022
$2.6M
Impact of longitudinal CMV viremia on opportunistic neuroinfections in advanced HIV diseaseK23NS137968 · NINDS · UNIVERSITY OF MINNESOTA · PI Caleb P Skipper · 2024 to 2026
$718k
HLA Alleles and the Progression of Human CryptococcosisR21AI150303 · NIAID · UNIVERSITY OF MINNESOTA · PI NIELSEN, KIRSTEN · 2020 to 2021
$438k
FIC NIH HHS D43 TW009345NCATS NIH HHS KL2 TR002492NCATS NIH HHS UL1 TR002494NIAID NIH HHS R01 AI176922NIAID NIH HHS R21 AI150303NIAID NIH HHS U01 AI125003NINDS NIH HHS K23 NS137968NINDS NIH HHS R01 NS086312NINDS NIH HHS R01 NS110519NINDS NIH HHS R01 NS118538
6 · The paper itself

Abstract

Cryptococcus neoformans is an opportunistic fungal infection and a leading cause of HIV-associated meningitis, contributing significantly to AIDS-related mortality, especially in Africa. Despite advancements in treatment, case fatality rates remain high, emphasizing the need for a better understanding of host immune responses. This study investigated the association between variation in the human leukocyte antigen (HLA) genes and the risk of cryptococcal disease in Ugandan individuals with HIV. We first described the allele prevalence in a prospectively enrolled Ugandan population using next-generation sequencing at a four-field resolution for classic HLA class I and II genes. We then conducted a case-control analysis involving 137 participants categorized as: 1) disseminated cryptococcosis but without meningitis, 2) cryptococcal meningitis, and 3) controls with similar degree of HIV disease but without cryptococcal infection. Across 66 unique alleles that met criteria for analysis, we found no significant associations between HLA variation and altered risk of disseminated cryptococcosis or cryptococcal meningitis after adjusting for multiple comparisons. However, before multiple comparisons correction, HLA-DPB1*04:01 demonstrated lower odds ratios for both disseminated disease and cryptococcal meningitis. Using public online databases, we analyzed predicted Cryptococcus peptide binding to HLA-DPB1*04:01 with predicted interferon-gamma responses and identified 121 viable peptides-leading us to hypothesize a role for the leading epitopes. This research underscores the need to further investigate the importance of the HLA system for host-pathogen interactions in HIV-associated cryptococcal disease.

Indexed as

AIDS-Related Opportunistic InfectionsCryptococcosisCryptococcus neoformansHIV InfectionsHLA AntigensMeningitis, CryptococcalAdultAllelesCase-Control StudiesFemaleGene FrequencyGenetic Predisposition to DiseaseHumansMaleProspective StudiesRisk FactorsHLA AntigensCryptococcal meningitisCryptococcosisCryptococcusHIVHLAMHC

Identifiers

PMID42289175
PMCPMC13312324

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.