Evidence map›Paper›PMID 42286369›Full record

ArticleMycopathologia2026

Long-Read Sequencing and Comparative Genome Analyses of Seven Emergomyces Type-Strains.

Ilan S Schwartz, Bert Gerrits van den Ende, Ferry Hagen

Abstract readComparative Study
In one paragraph

Article in Mycopathologia, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ilan S SchwartzDivision of Infectious Diseases, Department of Medicine, Duke University School of Medicine, Durham, NC, 27710, USA.ORCID http://orcid.org/0000-0002-7522-0281
Bert Gerrits van den EndeDepartment of Medical Mycology, Westerdijk Fungal Biodiversity Institute, 3584CT, Uppsalalaan 8, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0003-4439-3494
Ferry HagenDepartment of Medical Mycology, Westerdijk Fungal Biodiversity Institute, 3584CT, Uppsalalaan 8, Utrecht, The Netherlands. f.hagen-2@umcutrecht.nl.ORCID http://orcid.org/0000-0002-5622-1916

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Emergomyces (Ajellomycetaceae, Onygenales) is a genus of dimorphic fungal pathogens that cause severe, opportunistic infections around the world. We used long-read nanopore sequencing to generate de novo genome assemblies followed by comparative analyses for the type-strains of Emergomyces africanus, Emergomyces canadensis, Emergomyces crescens, Emergomyces europaeus, Emergomyces orientalis, Emergomyces pasteurianus, and Emergomyces soli. The average Emergomyces genome was found to be 32,965,087 bp in size (range 28,687,700-35,863,369 bp) with GC%-contents of 42.01-45.72%. Average Nucleotide Identity analysis of the seven type-strain genomes with the publicly available Emergomyces and Blastomyces genomes was performed, showing values of 85-100% similarity between genomes and 85-91% between the twelve species tested. Furthermore, we formally validate the species descriptions for Emergomyces crescens and Emergomyces soli.

Indexed as

Genome, FungalOnygenalesBase CompositionDNA, FungalNanopore SequencingPhylogenySequence Analysis, DNADNA, FungalAverage nucleotide identityComparative genomicsEmergomycesEmergomycosisNanopore sequencing

Identifiers

PMID42286369
PMCPMC13263191

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.