Evidence map›Paper›PMID 42283237›Full record

ArticleActa crystallographica. Section A, Foundations and advances2026

From atoms to a data bank: optimizing transferability of electron-density symmetry.

Paulina Maria Rybicka, Marta Kulik, Vladislav Ignat'ev, Paulina Maria Dominiak

Abstract read
In one paragraph

Article in Acta crystallographica. Section A, Foundations and advances, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Paulina Maria RybickaUniversity of Warsaw, Faculty of Chemistry, Biological and Chemical Research Centre, Żwirki i Wigury 101, Warsaw, 02-089, Poland.ORCID 0000-0003-0087-6208
Marta KulikUniversity of Warsaw, Faculty of Chemistry, Biological and Chemical Research Centre, Żwirki i Wigury 101, Warsaw, 02-089, Poland.ORCID 0000-0003-2381-7665
Vladislav Ignat'evUniversity of Warsaw, Faculty of Chemistry, Biological and Chemical Research Centre, Żwirki i Wigury 101, Warsaw, 02-089, Poland.
Paulina Maria DominiakUniversity of Warsaw, Faculty of Chemistry, Biological and Chemical Research Centre, Żwirki i Wigury 101, Warsaw, 02-089, Poland.ORCID 0000-0002-1466-1243

Funding

Narodowe Centrum Nauki UMO-2020/39/I/ST4/02904
6 · The paper itself

Abstract

The multipole model provides a significantly improved description of electron density compared with the spherical atom approximation and is widely applied in the crystallographic refinement of X-ray diffraction data. The multipolar atom types from theory and statistical clustering (MATTS) data bank collects multipole model parameters for atom types. These parameters are derived from quantum chemical calculations performed on experimental geometries of model molecules and rely on the concept of transferability between chemically similar atoms. An essential component of each atom type is the definition of the local coordinate system (LCS) and the symmetry of the electron density, which so far have been selected individually using expert judgment during data bank construction. In this work, we focus on the electron densities of atoms from model molecules and atom types from the MATTS data bank. We introduce a systematic procedure in which symmetry constraints are removed during multipole model refinement of model molecules and multiple types of LCS are tested using chemically meaningful directions. We examine how different LCS choices influence the pseudosymmetry, the apparent symmetry of electron density, identified empirically based on the refined multipole model parameters and their statistical significance. Our results show that refinement without symmetry constraints improves the representation of pseudosymmetry and, in some cases, leads to changes in both the values of the multipole model parameters and the assigned symmetry of the electron density. We propose an optimal LCS for each topological kind of atom type and provide clear criteria for symmetry assignment. This work contributes to the future development of the MATTS data bank with improved descriptions of LCSs and transferability of electron-density symmetry.

Indexed as

electron densityMATTSmultipolar atom types from theory and statistical clusteringquantum crystallographyTAAMtransferable aspherical atom model

Identifiers

PMID42283237
PMCPMC13325189

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.