Evidence map›Paper›PMID 42282835›Full record

ArticlebioRxiv : the preprint server for biology2026

MarkerScout: A Disease-Agnostic Machine Learning Framework for Biomarker Prediction from Multi-Scale Mechanistic Models.

Robert Moore, Frank Agayie-Ntim, Lindsey B Crawford, Prakash Packrisamy, Ahmed Abdeen Hamed, Tomáš Helikar

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Robert MooreDepartment of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, US.ORCID 0000-0003-1818-2271
Frank Agayie-NtimDepartment of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, US.ORCID 0009-0009-3418-4286
Lindsey B CrawfordDepartment of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, US.ORCID 0000-0003-1248-253X
Prakash PackrisamyDepartment of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, US.ORCID 0009-0003-2404-5561
Ahmed Abdeen HamedDepartment of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, US.ORCID 0000-0003-4411-8433
Tomáš HelikarDepartment of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, US.ORCID 0000-0003-3653-1906

Funding

Software for collaborative construction, simulation, and analysis of mechanistic computational models of biological systemsR35GM119770 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI Tomas Helikar · 2016 to 2026
$4.4M
NIGMS NIH HHS R35 GM119770
6 · The paper itself

Abstract

Identifying robust biomarkers from high-dimensional biomedical data is a central challenge in translational research, but candidate rankings produced by any single feature-selection or classification method depend on algorithmic choices and rarely reproduce across pipelines. We present a disease-agnostic machine-learning framework that addresses this dependence by systematically benchmarking 25 (feature-selection x classifier) pipelines under five-fold stratified cross-validation, aggregating per-feature evidence by two independent methods (a weighted-selection consensus score and Robust Rank Aggregation), and characterizing the direction of each candidate using Cohen's

Indexed as

Biomarkers PredictionDisease AgnosticMachine LearningMechanistic ResponseModelingMulti-scale Modeling

Identifiers

PMID42282835
PMCPMC13252179

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.