Evidence map›Paper›PMID 42282598›Full record

ArticlebioRxiv : the preprint server for biology2026

DipSkmer: Reference-free population genomics with diploid genome skims.

Eduardo Charvel, Homère J Alves Monteiro, Siavash Mirarab, Vineet Bafna

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Eduardo CharvelBioinformatics and Systems Biology Graduate Program, UC San Diego, La Jolla, California, USA.ORCID 0000-0001-8583-8491
Homère J Alves MonteiroCenter for Evolutionary Hologenomics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0001-6801-7237
Siavash MirarabDepartment of Electrical and Computer Engineering, UC San Diego, La Jolla, California, USA.ORCID 0000-0001-5410-1518
Vineet BafnaDepartment of Computer Science & Engineering, UC San Diego, La Jolla, California, USA.ORCID 0000-0002-5810-6241

Funding

Computational methods for detecting patterns of complex genomic variationR01GM114362 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Vineet Bafna · 2016 to 2026
$3.1M
NIGMS NIH HHS R01 GM114362
6 · The paper itself

Abstract

Ecologists and conservation biologists rely on genetic diversity as a key essential biodiversity variable (EBV) used to track population health and dynamics, and utilize the population parameter Availability: The code for DipSkmer is available at https://github.com/echarvel3/ReSkmer/tree/DipSkmer-REFACTOR. Simulation scripts and environments are available at https://github.com/echarvel3/dipskmer_scripts.

Identifiers

PMID42282598
PMCPMC13252406

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.