Evidence map›Paper›PMID 42282024›Full record

ArticleResearch square2026

Accurately fitting biophysical neuron models to experimental voltage data enabled by meta-learning.

Roy Ben-Shalom, Kyung Geun Kim, Alexander Ladd, Prarthan Ghosh, Timothy Fenton, Henry Kyoung, Ghazaleh Yazdani, Kaustubh Chakravarthula, Gunther H Weber, Caleb Geniesse and 3 more

Abstract readPreprint
In one paragraph

Article in Research square, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Roy Ben-ShalomMIND Institute, University of California, Davis, Sacramento, CA, USA.
Kyung Geun KimDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID 0000-0002-4324-1045
Alexander LaddDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA.
Prarthan GhoshDepartment of Electrical Engineering and Computer Sciences, University of California, Berkeley, Berkeley, CA, USA.
Timothy FentonMIND Institute, University of California, Davis, Sacramento, CA, USA.
Henry KyoungDepartment of Electrical Engineering and Computer Sciences, University of California, Berkeley, Berkeley, CA, USA.
Ghazaleh YazdaniMIND Institute, University of California, Davis, Sacramento, CA, USA.
Kaustubh ChakravarthulaMIND Institute, University of California, Davis, Sacramento, CA, USA.
Gunther H WeberScientific Data Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Caleb GeniesseScientific Data Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Tiankai XieSchool of Computing and Augmented Intelligence, Arizona State University, Tempe, AZ, USA.
Kevin J BenderWeill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0001-7084-1532
Kristofer E BouchardScientific Data Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0000-0002-1974-4603

Funding

Origins of ECoGR01NS118648 · NINDS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI BOUCHARD, KRISTOFER E. · 2020 to 2024
$1.9M
Towards a unified model of action potential generationF32NS095580 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BEN-SHALOM, ROY · 2015 to 2018
$172k
NINDS NIH HHS F32 NS095580NINDS NIH HHS R01 NS118648
6 · The paper itself

Abstract

The neuron is a fundamental unit of computation in the brain. Neuronal firing properties are governed by ion channels distributed across complex morphologies. Determining ionic conductances from experimental observations of intracellular membrane potentials would advance basic understanding and clinical translation, but is currently considered intractable. To enable accurate fitting of biophysical neuron models to experimental somatic voltage recordings, we developed a meta-learning algorithm ('CoMParE'). Using CoMParE to fit standard biophysically detailed models, we demonstrate state-of-the-art reproduction of experimental data and quantify parameter estimate precision and accuracy. We additionally fit models with enhanced electrophysiological detail and demonstrate further improvements in experimental data reproduction. Finally, we show that these improvements result from convexifying the objective function loss surface through meta-learning. These results demonstrate that highly detailed biophysical models can accurately reproduce experimental data, enabling determination of ionic conductances underlying neuronal function and neurological disorders, and indicating that this inverse problem is tractable.

Identifiers

PMID42282024
PMCPMC13252523

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.