Evidence map›Paper›PMID 42281351›Full record

ArticleChembiochem : a European journal of chemical biology2026

Mapping Functionally Relevant Tractable Lysines of Challenging Protein Targets by Covalent Fragment Screening.

Noémi Csorba, Péter Ábrányi-Balogh, Zoltán Orgován, Tibor Viktor Szalai, György G Ferenczy, Levente Kollár, Nikolett Péczka, Tímea Imre, József Simon, Pál Szabó and 9 more

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Noémi CsorbaMedicinal Chemistry Research Group, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.
Péter Ábrányi-BaloghMedicinal Chemistry Research Group, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.
Zoltán OrgovánMedicinal Chemistry Research Group, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.
Tibor Viktor SzalaiMedicinal Chemistry Research Group, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.ORCID https://orcid.org/0009-0000-4088-3117
György G FerenczyMedicinal Chemistry Research Group, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.
Levente KollárMedicinal Chemistry Research Group, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.
Nikolett PéczkaMedicinal Chemistry Research Group, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.
Tímea ImreMedicinal Chemistry Research Group, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.
József SimonMedicinal Chemistry Research Group, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.
Pál SzabóMS Metabolomics Research Group, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.ORCID https://orcid.org/0000-0003-2260-4641
Gitta SchlosserMTA-ELTE Lendület (Momentum) Ion Mobility Mass Spectrometry Research Group, Institute of Chemistry, ELTE Eötvös Loránd University, Budapest, Hungary.ORCID https://orcid.org/0000-0002-7637-7133
Martina HrastDepartment of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Ljubljana, Ljubljana, Slovenia.ORCID https://orcid.org/0000-0003-0488-2445
Stanislav GobecDepartment of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Ljubljana, Ljubljana, Slovenia.
Varbina IvanovaDepartament de Farmàcia i Tecnologia Farmacéutica i Fisicoquímica, Facultat de Farmàcia i Ciències de l'Alimentació, Universitat de Barcelona, Barcelona, Spain.
Carles GaldeanoDepartament de Farmàcia i Tecnologia Farmacéutica i Fisicoquímica, Facultat de Farmàcia i Ciències de l'Alimentació, Universitat de Barcelona, Barcelona, Spain.
Aleksandra KopranovicDepartment of Chemical Engineering and Biotechnology, University of Applied Sciences Darmstadt, Darmstadt, Germany.
Marc NeumannDepartment of Chemical Engineering and Biotechnology, University of Applied Sciences Darmstadt, Darmstadt, Germany.
Franz-Josef Meyer-AlmesDepartment of Chemical Engineering and Biotechnology, University of Applied Sciences Darmstadt, Darmstadt, Germany.
György Miklós KeserűMedicinal Chemistry Research Group, HUN-REN Research Centre for Natural Sciences, Budapest, Hungary.ORCID https://orcid.org/0000-0003-1039-7809

Funding

H2020 Marie Skłodowska-Curie Actions 956314 (ALLODD)Ministerio deCiencia, Innovación y Universidades PID2021-127693OB-I00Nemzeti Kutatási Fejlesztési és InnovációsHivatal RRF-2.3.1-21-2022-00015Nemzeti Kutatási Fejlesztési és InnovációsHivatal STARTING_25152137Schweizerischer Nationalfonds zurFörderung der Wissenschaftlichen Forschung MAPS 230109
6 · The paper itself

Abstract

Covalent fragment screening has become an established strategy for identifying targetable amino acid residues or viable chemical starting points against challenging protein targets. In recent years, lysine has received growing interest as a nucleophilic residue suitable for covalent labelling. Herein, we present a lysine-targeting covalent fragment library covering a wide range of warheads. The reactivity and stability of the library members have been systematically characterised, and the library has been subsequently screened against a set of therapeutically relevant and challenging protein targets. We have discovered suitable warheads against the targets and characterised binding sites via enzymatic digestion and modelling. These findings highlight the potential of lysine-targeting covalent chemistry to expand binding site discovery and to support warhead optimisation for diverse protein targets in both medicinal chemistry and chemical biology applications.

Indexed as

LysineProteinsSmall Molecule LibrariesBinding SitesHumansModels, MolecularProtein BindingLysineProteinsSmall Molecule Librariesallosteric sitescovalent fragmentelectrophilic warheadlysine labellingprotein–protein interaction

Identifiers

PMID42281351
PMCPMC13261308

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.