Evidence map›Paper›PMID 42277006›Full record

ArticleNature communications2026

Towards robust foundation models for digital pathology.

Jonah Kömen, Edwin D de Jong, Julius Hense, Hannah Marienwald, Jonas Dippel, Philip Naumann, Eric Marcus, Lukas Ruff, Maximilian Alber, Jonas Teuwen and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jonah Kömen *Berlin Institute for the Foundations of Learning and Data (BIFOLD), Berlin, Germany.ORCID 0009-0009-4606-4695
Edwin D de Jong *Aignostics GmbH, Berlin, Germany. jong.de.edwin.work@gmail.com.ORCID 0000-0002-0679-5196
Julius Hense *Berlin Institute for the Foundations of Learning and Data (BIFOLD), Berlin, Germany.ORCID 0009-0007-1160-1636
Hannah MarienwaldBerlin Institute for the Foundations of Learning and Data (BIFOLD), Berlin, Germany.
Jonas DippelBerlin Institute for the Foundations of Learning and Data (BIFOLD), Berlin, Germany.ORCID 0000-0002-0552-8977
Philip NaumannBerlin Institute for the Foundations of Learning and Data (BIFOLD), Berlin, Germany.ORCID 0000-0002-6929-8568
Eric MarcusThe Netherlands Cancer Institute Amsterdam (NKI), Antoni van Leeuwenhoek Hospital (AvL), Amsterdam, Netherlands.
Lukas RuffAignostics GmbH, Berlin, Germany.ORCID 0000-0002-9707-297X
Maximilian AlberAignostics GmbH, Berlin, Germany.
Jonas TeuwenThe Netherlands Cancer Institute Amsterdam (NKI), Antoni van Leeuwenhoek Hospital (AvL), Amsterdam, Netherlands.ORCID 0000-0002-1825-1428
Frederick KlauschenBerlin Institute for the Foundations of Learning and Data (BIFOLD), Berlin, Germany. f.klauschen@lmu.de.ORCID 0000-0002-9131-2389
Klaus-Robert MüllerBerlin Institute for the Foundations of Learning and Data (BIFOLD), Berlin, Germany. klaus-robert.mueller@tu-berlin.de.ORCID 0000-0002-3861-7685

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 01IS14013A-E, 01GQ1115, 01GQ0850, 01IS18056A, 01IS18025A, 13GW0744D, BIFOLD25BKorea University (KU) RS-2019-II190079, RS-2024-00457882
6 · The paper itself

Abstract

Biomedical Foundation Models (FMs) are transforming AI-enabled healthcare research and entering clinical validation. However, their susceptibility to learning non-biological features - including variations in laboratory procedures and scanner hardware - poses risks for clinical deployment. We introduce PathoROB, a public benchmark quantifying FM robustness to non-biological features. Representation-level robustness is assessed using the robustness index, while output-level robustness is evaluated across clinically relevant settings, including patch- and slide-level prediction, case retrieval, and clustering tasks. Our experiments reveal robustness deficits across all 20 evaluated FMs, with substantial differences between them. We find that non-robust FM representations can cause major diagnostic downstream errors preventing safe clinical adoption. Using more robust FMs, vision-language alignment, and post-hoc robustification reduces (but does not yet eliminate) the risk of such errors. This work establishes that robustness evaluation is essential for validating pathology FMs before clinical adoption and provides a blueprint for assessing and improving robustness across biomedical domains.

Indexed as

PathologyDigital HealthHumans

Identifiers

PMID42277006
PMCPMC13260997

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.