Evidence map›Paper›PMID 42271041›Full record

ArticleNature structural & molecular biology2026

Semirandom DNA adducts regulate a filamentous defense-associated reverse transcriptase.

Nolan Neville, Nicole V Johnson, Edwin E Escobar, Chang-Hwa Chiang, Albana Nreca, Sean R Johnson, Nan Dai, Andy Hanneman, Ivan R Corrêa, Jason S McLellan and 1 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Nolan Neville *New England Biolabs Inc., Ipswich, MA, USA.
Nicole V Johnson *Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA.
Edwin E EscobarNew England Biolabs Inc., Ipswich, MA, USA.ORCID http://orcid.org/0000-0002-0086-6264
Chang-Hwa ChiangNew England Biolabs Inc., Ipswich, MA, USA.ORCID http://orcid.org/0000-0003-1363-9148
Albana NrecaNew England Biolabs Inc., Ipswich, MA, USA.
Sean R JohnsonNew England Biolabs Inc., Ipswich, MA, USA.ORCID http://orcid.org/0000-0001-8261-9015
Nan DaiNew England Biolabs Inc., Ipswich, MA, USA.ORCID http://orcid.org/0000-0003-3268-1835
Andy HannemanNew England Biolabs Inc., Ipswich, MA, USA.
Ivan R CorrêaNew England Biolabs Inc., Ipswich, MA, USA.ORCID http://orcid.org/0000-0002-3169-6878
Jason S McLellanDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX, USA. jmclellan@austin.utexas.edu.ORCID http://orcid.org/0000-0003-3991-542X
Robert J TrachmanNew England Biolabs Inc., Ipswich, MA, USA. rtrachman@neb.com.ORCID http://orcid.org/0000-0001-7459-2457

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retrons and several defense-associated reverse transcriptases (DRTs) synthesize non-genomic DNA for bacteriophage immunity. In some instances, this non-genomic DNA is of undefined, semirandom sequence. How undefined DNA sequences impart antiphage defense is not known. Herewe report the cryo-EM structure and functional characterization of the DRT1 antiphage defense system. We show that DRT1 performs template-free, protein-primed DNA synthesis to generate semirandom DNA adducts. DNA synthesis activates the nitrilase domain of DRT1, while DNA adducts drive the assembly of quiescent DRT1 filaments. Filamentous DRT1 is composed of domain-swapped C termini that are entwined, forming pseudoknots between tetrameric stacks. This configuration occludes conserved active-site residues, resulting in a dormant state. Bacteriophage escape mutants identify a T4 single-stranded DNA helicase required for DRT1 activity. Functionally, DRT1 resembles a minimal retron where a single gene produces a reverse transcriptase, effector and non-genomic antitoxin DNA.

Indexed as

DNA AdductsRNA-Directed DNA PolymeraseViral ProteinsBacteriophagesCatalytic DomainCryoelectron MicroscopyDNA HelicasesModels, MolecularDNA AdductsDNA HelicasesRNA-Directed DNA PolymeraseViral Proteins

Identifiers

PMID42271041
PMCPMC13275509

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.