Evidence map›Paper›PMID 42270938›Full record

ArticleCommunications biology2026

Single-cell transcriptomics reveals differences between chorionic and basal plate cytotrophoblasts and 2D-cultured trophoblast stem cells.

Robert Morey, Francesca Soncin, Sampada Kallol, Nirvay Sah, Zoe Manalo, Tony Anh Bui, Jaroslav Slamecka, Virginia Chu Cheung, Donald Pizzo, Daniela F Requena and 8 more

Abstract read
In one paragraph

Article in Communications biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Creatine kinase regulates energy metabolism and growth of trophoblasts.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Stem cell models of human embryo implantation and trophoblast invasion.Current opinion in genetics & development · 2025
    Review
  5. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Robert Morey *Department of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0001-8480-4564
Francesca Soncin *Department of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Sampada KallolDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Nirvay SahDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Zoe ManaloDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Tony Anh BuiDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0001-9744-3120
Jaroslav SlameckaDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0003-3610-3223
Virginia Chu CheungDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0003-2617-823X
Donald PizzoDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-8022-3604
Daniela F RequenaDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Ching-Wen ChangDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Omar FarahDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Ryan KittleDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.ORCID 0009-0007-1147-5190
Kelly LamDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Morgan MeadsDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Mariko HoriiDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-4996-6792
Kathleen M FischCenter for Perinatal Discovery, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-0117-7444
Mana M ParastDepartment of Pathology, School of Medicine, University of California San Diego, La Jolla, CA, USA. mparast@health.ucsd.edu.ORCID 0000-0001-5963-2246

Funding

UC San Diego Clinical and Translational Research InstituteUL1TR001442 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S, HOGARTH, MICHAEL · 2015 to 2024
$88.3M
Cellular Atlas of the Human Placenta: Structure-Function Relationships and their Implications for Placental DysfunctionR01HD104805 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PARAST, MANA M · 2021 to 2025
$2.8M
Trophoblast progenitor heterogeneity and function in normal and Trisomy 21-affected placentaeR01HD111787 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Mana M Parast · 2023 to 2026
$2.6M
Role of VGLL1 in human placental development and trophoblast specificationR01HD096260 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SONCIN, FRANCESCA · 2019 to 2023
$2.5M
Human Trophoblast Stem Cells: the In Vivo Niche and Relationship to Pluripotent Stem CellsR01HD089537 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PARAST, MANA M · 2017 to 2021
$2.4M
Modeling Preeclampsia Using Human Pluripotent Stem CellsR00HD091452 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HORII, MARIKO · 2020 to 2022
$737k
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
National Science Foundation (NSF) ACI-1548562NCATS NIH HHS UL1 TR001442NICHD NIH HHS R00 HD091452NICHD NIH HHS R01 HD089537NICHD NIH HHS R01 HD096260NICHD NIH HHS R01 HD104805NICHD NIH HHS R01 HD111787NIH HHS S10 OD026929ODCDC CDC HHS S10 OD026929U.S. Department of Health & Human Services | National Institutes of Health (NIH) 2UL1TR001442-08U.S. Department of Health & Human Services | National Institutes of Health (NIH) R00-HD091452U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01-HD089537U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01-HD096260U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01-HD104805U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01-HD111787U.S. Department of Health & Human Services | National Institutes of Health (NIH) S10 OD026929
6 · The paper itself

Abstract

Cytotrophoblast (CTB) of the early gestation human placenta are bipotent progenitor epithelial cells, which can differentiate into invasive extravillous trophoblast (EVT) and multinucleated syncytiotrophoblast (STB). Trophoblast stem cells (TSC), derived from early first trimester placentas, have also been shown to be bipotential; however, their cell-of-origin has not been identified. In this study, we set out to probe the transcriptional diversity of early and late first trimester villous CTB (vCTB) and compare these to TSC. To this end, we performed single-cell RNA sequencing (scRNA-seq) on placental villous tissue from early (6-8 weeks) and late (12-14 weeks) first trimester placentas; we also evaluated CTB within basal (maternal) and chorionic (fetal) regions of early first trimester placenta, both by scRNA-seq and GeoMx-based spatial transcriptomics. Finally, we performed scRNA-seq on three TSC lines, derived from 6-8 week gestation placentas, as well as on early first trimester CTB at several timepoints during TSC derivation. We observed differences within CTB clusters associated with gestational age, further influenced by location near the basal or chorionic plates. We identified trophoblast states representing "initial state" vCTB (in vivo CTB progenitors), as well as additional CTB subtypes, precursor STB, and precursor and mature EVT. CTB progenitors appeared enriched in early first trimester placentas at the basal plate; additionally, basal plate CTB showed transcriptional features consistent with EVT bias, whereas chorionic plate CTB showed features associated with STB precursors. Clustering and trajectory inference analysis indicated that TSC were most like EVT precursor cells. In fact, vCTB lost their in vivo "initial state" markers, including PAGE4, as they transitioned to TSC during in vitro culture. This was confirmed by flow cytometric analysis of 6 different TSC lines, which showed uniform expression of proximal column markers ITGA2 and ITGA5. Additionally, we found that ITGA5

Indexed as

ChorionStem CellsTranscriptomeTrophoblastsCell DifferentiationCells, CulturedExtravillous TrophoblastsFemaleHumansPlacentaPregnancyPregnancy Trimester, FirstSingle-Cell AnalysisSingle-Cell Gene Expression Analysis

Identifiers

PMID42270938
PMCPMC13594312

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.