Evidence map›Paper›PMID 42270909›Full record

ArticleScientific reports2026

Marker-trait association analysis revealed loci linked to salinity tolerance in a worldwide collection of safflower.

Fatemeh Saeidnia, Mohammad Mahdi Majidi, Fatemeh Ebrahimi, Soroor Mansoori, Hossein Ali Zarei

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Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Fatemeh SaeidniaAgricultural and Horticultural Science Research Department, Khorasan Razavi Agricultural and Natural Resources Research and Education Center, Agricultural Research, Education and Extension Organization, Mashhad, 91769-83641, Iran. f.saeidnia@areeo.ac.ir.ORCID http://orcid.org/0000-0001-7206-8651
Mohammad Mahdi MajidiDepartment of Agronomy and Plant Breeding, College of Agriculture, Isfahan University of Technology, Isfahan, 84156-83111, Iran.ORCID http://orcid.org/0000-0003-4746-9036
Fatemeh EbrahimiResearch and Technology Institute of Plant Production, Afzalipour Research Institute, Shahid Bahonar University of Kerman, Kerman, Iran.
Soroor MansooriDepartment of Agronomy and Plant Breeding, College of Agriculture, Isfahan University of Technology, Isfahan, 84156-83111, Iran.
Hossein Ali ZareiDepartment of Agronomy and Plant Breeding, College of Agriculture, Isfahan University of Technology, Isfahan, 84156-83111, Iran.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The present investigation was designed to identify molecular marker loci linked to essential agronomic traits and oil content under contrasting salinity regimes, and to evaluate the stability of these associations within a globally representative safflower (Carthamus tinctorius L.) germplasm collection. Over two successive years, 100 accessions were evaluated, generating 341 polymorphic amplified fragment length polymorphism (AFLP) markers using 10 EcoRI/MseI primer combinations. These markers were subsequently employed in association mapping analyses encompassing 17 agronomic traits and their derived indices. Population structure assessment revealed three genetically distinct subgroups within the panel. Mixed linear model (MLM) analysis facilitated the identification of 140 significant MTAs under non-saline conditions and 128 MTAs under salinity stress. Several loci exhibited associations with multiple traits, suggesting either pleiotropic regulatory functions or tight genetic linkage. Markers M61/E37-1, M61/E37-16, M62/E41-15, M60/E38-9, M51/E41-31, M61/E40-20, and M47/E37-9 were consistently associated with salinity tolerance across environments. After confirmation, these MTAs represent valuable resources for marker-assisted selection and for the targeted introgression of favorable alleles into safflower breeding programs adapted to both optimal and saline conditions. Furthermore, the results provide a critical framework for fine-scale genetic mapping and the eventual isolation of causal genes and quantitative trait loci (QTLs) that confer salinity tolerance.

Indexed as

Carthamus tinctoriusQuantitative Trait LociSalt ToleranceAmplified Fragment Length Polymorphism AnalysisChromosome MappingGenetic Association StudiesGenetic LinkageGenetic MarkersSalinityGenetic MarkersAssociation analysisGenome-wide association studyIonic stressOil cropsPopulation structureSalt

Identifiers

PMID42270909
PMCPMC13500683

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