Evidence map›Paper›PMID 42268925›Full record

ArticleeLife2026

Deep mutational scanning reveals pharmacologically relevant insights into TYK2 signaling and disease.

Conor J Howard, Nathan S Abell, Robert R Warneford-Thomson, Eden Mahdavi, Alan L Su, Carmen Resnick, Nabil Mohammed, Erin M Thompson, Emily R Holzinger, Katrina Catalano and 14 more

Abstract read
In one paragraph

Article in eLife, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Exome sequencing directly implicates 68 genes in inflammatory bowel disease.medRxiv : the preprint server for health sciences · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Conor J HowardOctant, Inc, Emeryville, United States.ORCID https://orcid.org/0000-0001-5375-6248
Nathan S AbellOctant, Inc, Emeryville, United States.ORCID https://orcid.org/0000-0003-1098-5395
Robert R Warneford-ThomsonOctant, Inc, Emeryville, United States.ORCID https://orcid.org/0000-0002-4521-0568
Eden MahdaviOctant, Inc, Emeryville, United States.
Alan L SuOctant, Inc, Emeryville, United States.
Carmen ResnickOctant, Inc, Emeryville, United States.
Nabil MohammedOctant, Inc, Emeryville, United States.
Erin M ThompsonOctant, Inc, Emeryville, United States.
Emily R HolzingerBristol-Myers Squibb, New York, United States.
Katrina CatalanoBristol-Myers Squibb, New York, United States.
Abhay HukkuBristol-Myers Squibb, New York, United States.
Gabriel A MintierBristol-Myers Squibb, New York, United States.
Morgan MacKenzieOctant, Inc, Emeryville, United States.
Bryan L JiangOctant, Inc, Emeryville, United States.
Dora Barbosa RabagoOctant, Inc, Emeryville, United States.
Angela ChanBristol-Myers Squibb, New York, United States.
Carolindah NtimiBristol-Myers Squibb, New York, United States.
Kaitlyn N WeilerBristol-Myers Squibb, New York, United States.
Stephen C WilsonBristol-Myers Squibb, New York, United States.
Joseph C MaranvilleBristol-Myers Squibb, New York, United States.
Payal R ShethBristol-Myers Squibb, New York, United States.
Robert M PlengeBristol-Myers Squibb, New York, United States.
Sriram KosuriOctant, Inc, Emeryville, United States.ORCID https://orcid.org/0000-0002-4661-0600
Diane E DickelOctant, Inc, Emeryville, United States.ORCID https://orcid.org/0000-0001-5497-6824

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tyrosine kinase 2 (TYK2) is a genetically defined target for autoimmune disease, with first-generation inhibitors showing clinical success in some but not all associated indications. A deeper understanding of TYK2 structure-function relationships, protein-ligand interactions, and the impact of human variants could inform next-generation therapeutics. Here, we applied deep mutational scanning (DMS) to assess >23,000 amino acid substitutions across two TYK2 functions: interferon alpha (IFN-α) signaling and protein abundance. This enabled high-resolution structure-function mapping and the identification of novel allosteric sites. By coupling DMS with inhibitor treatment, we uncovered variants that modulate compound potency. We also show that human variants - both common and rare - that are protective against autoimmune phenotypes reduce TYK2 protein abundance. Together, these findings demonstrate that DMS can prospectively reveal novel druggable sites, clarify structure-activity relationships (SAR), and highlight TYK2 degradation as a potential therapeutic strategy in autoimmunity.

Indexed as

Autoimmune DiseasesSignal TransductionTYK2 KinaseAmino Acid SubstitutionDNA Mutational AnalysisHumansInterferon-alphaMutationStructure-Activity RelationshipTyrosine Kinase InhibitorsInterferon-alphaTYK2 KinaseTYK2 protein, humanTyrosine Kinase Inhibitorsautoimmune diseasedeep mutational scanningfunctional genomicsgeneticsgenomicshumanhuman geneticsimmune signalingimmunologyinflammationmultiplexed assays of variant effect

Identifiers

PMID42268925
PMCPMC13252953

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.