Evidence map›Paper›PMID 42261054›Full record

ReviewMolecular ecology resources2026

A Roadmap for Using Hybridisation Capture-Based Target Enrichment of Ancient Environmental DNA in Palaeoecology.

Nicole R Foster, Luke E Holman, Linda Armbrecht, Jérémy Courtin, Theis Jensen, Mikkel Winther Pedersen, Lennart Schreiber, Hannes Schroeder, Frederik V Seersholm, Giulia Zampirolo and 2 more

Abstract readReview
In one paragraph

Review in Molecular ecology resources, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Nicole R FosterCentro de Estudios Avanzados de Blanes, Consejo Superior de Investigaciones Cientificas, Blanes, Spain.ORCID https://orcid.org/0000-0001-7159-7391
Luke E HolmanSection for Molecular Ecology and Evolution, Globe Institute, University of Copenhagen, Copenhagen, Denmark.ORCID https://orcid.org/0000-0002-8139-3760
Linda ArmbrechtInstitute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia.
Jérémy CourtinGeological Survey of Denmark and Greenland, Department of Glaciology and Climate, Copenhagen, Denmark.
Theis JensenSection for Molecular Ecology and Evolution, Globe Institute, University of Copenhagen, Copenhagen, Denmark.
Mikkel Winther PedersenSection for GeoGenetics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.
Lennart SchreiberSection for Molecular Ecology and Evolution, Globe Institute, University of Copenhagen, Copenhagen, Denmark.
Hannes SchroederSection for Molecular Ecology and Evolution, Globe Institute, University of Copenhagen, Copenhagen, Denmark.
Frederik V SeersholmSection for GeoGenetics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.ORCID https://orcid.org/0000-0003-2217-3247
Giulia ZampiroloSection for Molecular Ecology and Evolution, Globe Institute, University of Copenhagen, Copenhagen, Denmark.ORCID https://orcid.org/0009-0001-0145-1538
Kristine BohmannSection for Molecular Ecology and Evolution, Globe Institute, University of Copenhagen, Copenhagen, Denmark.ORCID https://orcid.org/0000-0001-7907-064X
Heike H ZimmermannGeological Survey of Denmark and Greenland, Department of Glaciology and Climate, Copenhagen, Denmark.

Funding

Australian Research Council (ARC) DP250100886Australian Research Council (ARC) DP250103420European Union's Horizon 2020 Research and Innovation Program 856488European Union's Horizon Europe Marie Sklodowska-Curie Actions 101105307Independent Research Fund Denmark
6 · The paper itself

Abstract

Recovering ancient DNA from environmental samples is transforming the way we understand historical ecosystems. While high-throughput sequencing of the total DNA in environmental samples (shotgun metagenomic sequencing) reveals the taxonomic contents of these samples, the genetic signals of some taxa (e.g., eukaryotes) can be weak compared to the background levels of DNA from organisms such as bacteria, requiring deep sequencing approaches that are costly. Thus, to increase cost-effectiveness, pre-sequencing enrichment of target DNA can be advantageous. One technique to enrich this target DNA is hybridisation capture, where short RNA or DNA baits are designed to match, bind and isolate specific stretches of DNA. Hybridisation capture has previously been applied to recover DNA from ancient skeletal remains, but it is only beginning to emerge as an approach to characterise organisms from ancient environmental samples. Thus, there is limited information on establishing hybridisation capture workflows for ancient environmental DNA applications, including the limitations and advantages. This mini review focuses on establishing a roadmap for the applications of hybridisation capture to ancient environmental DNA samples.

Indexed as

DNA, AncientDNA, EnvironmentalMetagenomicsNucleic Acid HybridizationPaleontologyDNA, AncientDNA, EnvironmentalaDNAancient eDNAbait captureeDNAhybridisation capturemetagenomicsprobessedaDNA

Identifiers

PMID42261054
PMCPMC13247352

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.