Evidence map›Paper›PMID 42258540›Full record

ArticleNucleic acids research2026

Long-term stability of RNA nucleoside standards for accurate LC-MS quantification.

Kira Kerkhoff, Hagen Wesseling, Yuyang Qi, Sofia Obersteiner, Kuangjie Liu, Maximilian Berg, Leona Rusling, Hendrik Zipse, Stefanie Kaiser

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kira KerkhoffGoethe University Frankfurt, Institute of Pharmaceutical Chemistry, Max-von-Laue-Str. 9, 60438 Frankfurt, Germany.
Hagen WesselingGoethe University Frankfurt, Institute of Pharmaceutical Chemistry, Max-von-Laue-Str. 9, 60438 Frankfurt, Germany.
Yuyang QiGoethe University Frankfurt, Institute of Pharmaceutical Chemistry, Max-von-Laue-Str. 9, 60438 Frankfurt, Germany.
Sofia ObersteinerGoethe University Frankfurt, Institute of Pharmaceutical Chemistry, Max-von-Laue-Str. 9, 60438 Frankfurt, Germany.
Kuangjie LiuDepartment of Chemistry, LMU Munich, Butenandtstrasse 5-13, 81377 Munich, Germany.
Maximilian BergGoethe University Frankfurt, Institute of Pharmaceutical Chemistry, Max-von-Laue-Str. 9, 60438 Frankfurt, Germany.
Leona RuslingGoethe University Frankfurt, Institute of Pharmaceutical Chemistry, Max-von-Laue-Str. 9, 60438 Frankfurt, Germany.ORCID 0000-0003-0185-2056
Hendrik ZipseDepartment of Chemistry, LMU Munich, Butenandtstrasse 5-13, 81377 Munich, Germany.ORCID 0000-0002-0534-3585
Stefanie KaiserGoethe University Frankfurt, Institute of Pharmaceutical Chemistry, Max-von-Laue-Str. 9, 60438 Frankfurt, Germany.ORCID 0000-0003-3224-7502

Funding

Deutsche Forschungsgemeinschaft 325871075-SFB 1309
6 · The paper itself

Abstract

Accurate LC-MS (liquid chromatography coupled mass spectrometry) analysis of RNA modifications relies on synthetic nucleoside standards whose chemical integrity determines both qualitative identification and quantitative measurements. While the purity of these standards is typically verified prior to use, their long-term chemical stability during storage has not been systematically investigated. Here, we evaluated the stability of 44 canonical and modified ribonucleosides in aqueous solution during storage at -80°C and -20°C. Initial quality control confirmed the identity of all tested standards and revealed purity issues in selected compounds, including contamination of 1-methyladenosine (m1A) with 6-methyladenosine (m6A) and the presence of S- and R-isomers of 5-(carboxyhydroxymethyl)-2'-O-methyluridine (mchm5Um). Long-term LC-UV-MS monitoring over 12 months showed that 30 nucleosides remained stable, 2 were stable for at least six months, and 12 exhibited substantial quantitative changes. Seven nucleosides formed detectable degradation products, most of which could be structurally assigned. Quantum-chemical calculations of reaction-free energies for deglycosylation, deamination, deacetylation, and desulfurization correlated with the experimentally observed stability trends. Based on these results, we propose a practical guideline for the preparation, storage, and analytical quality control of nucleoside standards, including recommendations for purity verification by UV spectroscopy and quantitative nuclear magnetic resonance spectroscopy (NMR). These guidelines provide an experimental framework to improve the robustness and inter-laboratory comparability of LC-MS-based RNA modification analysis.

Indexed as

Liquid Chromatography-Mass SpectrometryNucleosidesRibonucleosidesRNAAdenosineChromatography, LiquidReference StandardsRNA StabilityAdenosineNucleosidesRibonucleosidesRNA

Identifiers

PMID42258540
PMCPMC13244150

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.