Evidence map›Paper›PMID 42252617›Full record

ArticleThe New phytologist2026

A cyclo-DOPA 6-O-glucosyltransferase-mediated route for gomphrenin I biosynthesis in Basella alba and Gomphrena globosa.

Tomohiro Imamura, Ryouta Shigehisa, Akio Miyazato, Nami Matsumura, Kaisei Miyaki, Tenta Segawa, Masahide Yoshizumi, Hiroki Takagi, Takumi Yamaguchi, Shinya Ohki and 1 more

Abstract read
In one paragraph

Article in The New phytologist, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Tomohiro Imamura *Department of Bioproduction Science, Ishikawa Prefectural University, 308-1 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan.ORCID https://orcid.org/0000-0003-2277-9134
Ryouta Shigehisa *Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, 308-1 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan.
Akio MiyazatoCenter for Nano Materials and Technology (CNMT), Japan Advanced Institute of Science and Technology (JAIST), 1-1 Asahidai, Nomi, Ishikawa, 923-1292, Japan.
Nami MatsumuraDepartment of Bioproduction Science, Ishikawa Prefectural University, 308-1 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan.
Kaisei MiyakiDepartment of Bioproduction Science, Ishikawa Prefectural University, 308-1 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan.
Tenta SegawaDepartment of Bioproduction Science, Ishikawa Prefectural University, 308-1 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan.ORCID https://orcid.org/0000-0002-1286-5090
Masahide YoshizumiDepartment of Bioproduction Science, Ishikawa Prefectural University, 308-1 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan.
Hiroki TakagiDepartment of Bioproduction Science, Ishikawa Prefectural University, 308-1 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan.ORCID https://orcid.org/0000-0002-8576-9892
Takumi YamaguchiSchool of Materials Science, Japan Advanced Institute of Science and Technology (JAIST), 1-1 Asahidai, Nomi, Ishikawa, 923-1292, Japan.ORCID https://orcid.org/0000-0003-1521-1153
Shinya OhkiCenter for Nano Materials and Technology (CNMT), Japan Advanced Institute of Science and Technology (JAIST), 1-1 Asahidai, Nomi, Ishikawa, 923-1292, Japan.ORCID https://orcid.org/0000-0002-5497-7277
Masashi MoriResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, 308-1 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan.ORCID https://orcid.org/0000-0002-9021-8104

Funding

Japan Society for the Promotion of Science 20K06049Japan Society for the Promotion of Science 21H05032Japan Society for the Promotion of Science 23K05228Japan Society for the Promotion of Science 25H00431Japan Society for the Promotion of Science 26K08789
6 · The paper itself

Abstract

Betacyanins are red pigments characteristic of Caryophyllales and show considerable structural diversity, yet the enzymatic basis underlying 6-O-glucosylated betacyanins, such as gomphrenin I, has remained unclear. In particular, how alternative glucosylation patterns contribute to betacyanin diversification is poorly understood. Here, we identified cyclo-DOPA glucosyltransferases from Basella alba and Gomphrena globosa and examined their roles in gomphrenin I biosynthesis using transient expression assays and tobacco BY-2 cell systems. Phylogenetic analyses, structural modelling, and site-directed mutagenesis were employed to investigate their functional and structural characteristics. BacDOPA5/6GTs catalysed both 5-O- and 6-O-glucosylation of cyclo-DOPA, leading to the production of betanin and gomphrenin I, whereas GgcDOPA6GT specifically mediated gomphrenin I formation. These enzymes belong to distinct subclades within the cDOPA-GT family, and mutational analyses demonstrated essential roles for conserved histidine residues and an α-helical region adjacent to the catalytic site. Thermal stability analyses further showed that gomphrenin I is more thermally stable than betanin, likely due to the formation of an intramolecular hydrogen bond. Together, these results reveal an additional cDOPA6GT-mediated route for gomphrenin I biosynthesis and provide insight into the diversification and functional specialisation of betacyanins, linking the position of glucosylation to pigment stability and biochemical properties.

Indexed as

AmaranthaceaeBetacyaninsBiosynthetic PathwaysCaryophyllalesGlucosyltransferasesAmino Acid SequenceGlycosylationModels, MolecularMutagenesis, Site-DirectedPhylogenyPlant ProteinsBetacyaninsGlucosyltransferasesPlant ProteinsBasella albabetalain biosynthesisbetalainscyclo‐DOPA 5/6‐O‐glucosyltransferasecyclo‐DOPA 6‐O‐glucosyltransferaseGomphrena globosaGomphrenin I

Identifiers

PMID42252617
PMCPMC13443012

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.