ArticleScientific data2026
High quality genome assemblies of African cattle breeds using PacBio HiFi sequencing.
Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
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Who cites it
4 citing papers in PubMed.
- A High-Quality Haplotype-Resolved Reference Genome for Drakensberger Cattle (Bos taurus indicus/taurus) Achieved Through Trio-Binned Long-Read Sequencing.Scientific data · 2026Article
- High quality genome assemblies of African cattle breeds using PacBio HiFi sequencing.Scientific data · 2026Article
- Unlocking the African bioeconomy and strengthening biodiversity conservation through genomics and bioinformatics.npj biodiversity · 2025Review
- A comprehensive water buffalo pangenome reveals extensive structural variation linked to population-specific signatures of selection.GigaScience · 2025Article
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15 authors.
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Abstract
Africa has a uniquely rich cattle diversity of ~150 breeds comprising the Bos taurus indicus sub-species, Bos taurus taurus, and their crosses. These represent ~23% of the global cattle population. However, high quality, representative assemblies are limited for African cattle and especially for indicine breeds. Here we built high quality de novo assemblies for five important African indigenous cattle breeds using PacBio HiFi sequencing: Lagune (Bos taurus taurus), Gudali, Iringa Red and Singida White (Bos taurus indicus), and Mpwapwa (Bos taurus taurus x Bos taurus indicus). These new assemblies are the most contiguous and complete African cattle assemblies produced so far, with genome sizes of 3.25-3.36 Gb, contiguity N50s ranging from 83.59 Mb to 97.87 Mb and scaffold N50s from 100.30 Mb to 113.37 Mb. BUSCO genome completeness scores were also higher than 99.68%, indicative of highly contiguous assemblies. These improved and highly contiguous genome assemblies are consequently a valuable resource for future African and global livestock genomic studies.
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