Evidence map›Paper›PMID 42251052›Full record

ArticleNature communications2026

A multi-ethnic reference map of T cell receptor germline diversity reveals evidence of natural selection on alpha chain genes.

Sreekar Mantena, Ryuya Edahiro, Yukinori Okada, Ali Akbari, Soumya Raychaudhuri

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Sreekar MantenaCenter for Data Sciences, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-8834-1461
Ryuya EdahiroDepartment of Statistical Genetics, Graduate School of Medicine, The University of Osaka, Suita, Japan.
Yukinori OkadaDepartment of Statistical Genetics, Graduate School of Medicine, The University of Osaka, Suita, Japan.ORCID http://orcid.org/0000-0002-0311-8472
Ali AkbariProgram in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Soumya RaychaudhuriCenter for Data Sciences, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA. soumya@broadinstitute.org.ORCID http://orcid.org/0000-0002-1901-8265

Funding

Role of fibroblastic stromal cells and notch signaling in tissue inflammation in RA and SLEP01AI148102 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI Michael B. Brenner, Nir Hacohen · 2021 to 2026
$17.3M
Medical Scientist Training ProgramT32GM144273 · NIGMS · HARVARD MEDICAL SCHOOL · PI David Shumway Jones, Jacqueline A. Lees · 2022 to 2026
$14.7M
Discovery and Functional Impact of Common and Rare Variants in RAR01AR063759 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Soumya Raychaudhuri · 2013 to 2026
$5.4M
Predicting the impact of genetic variants, genes and pathways on human DiseaseU01HG012009 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI ALKES L PRICE, Soumya Raychaudhuri · 2021 to 2026
$4.2M
Integrative modelling of single-cell data to elucidate the genetic architecture of complex diseaseR56HG013083 · NHGRI · DANA-FARBER CANCER INST · PI GUSEV, ALEXANDER, PRICE, ALKES L · 2023 to 2023
$400k
Japan Agency for Medical Research and Development (AMED) JP25tm0424233, JP25gm7110002, JP24gm1810012, JP24ek0210207NHGRI NIH HHS R56 HG013083NHGRI NIH HHS U01 HG012009NIAID NIH HHS P01 AI148102NIAMS NIH HHS R01 AR063759NIGMS NIH HHS T32 GM144273U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01AR063759, P01AI148102, U01HG012009, R56HG013083, and T32GM144273
6 · The paper itself

Abstract

T cell receptors (TCR) orchestrate adaptive immunity, yet the complex, repetitive architecture of the TCR loci has impeded systematic characterization of human genetic variation in the genes encoding the TCR. Using public long-read sequencing data from the Human Pangenome Reference Consortium and All of Us consortia spanning 2719 donors, we build a near-complete map of common alleles in TCR V, D, and J genes, revealing amino acid variation at almost every position within V genes. We observe allele frequency differences between populations for many individual TCR genes. We present evidence of natural selection on TCR genes, including signals of balancing selection and positive selection in the alpha chain locus. We find TCR allelic polymorphism alters core functional properties of T cells, including thymic fate commitment and cell-surface receptor abundance. Collectively, these findings position inherited variation in TCR genes as a key axis of immunological diversity that may shape interindividual differences in immune responses.

Indexed as

EthnicityGenes, T-Cell Receptor alphaReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaSelection, GeneticAllelesGene FrequencyGenetic VariationHumansPolymorphism, GeneticT-LymphocytesReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID42251052
PMCPMC13396459

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.