Evidence map›Paper›PMID 42248845›Full record

ArticleSignal transduction and targeted therapy2026

Histone deacetylase enzyme activity is not the universal anticancer target of HDAC inhibitors.

Chaitra Rai, Hang Ruan, Xue Li, Wenbo Li, Hyun-Hwan Jeong, Chengchuang Song, Panpan Liu, Yingjie Chang, Hao Fang, Udhaya Kumar S and 7 more

Abstract read
In one paragraph

Article in Signal transduction and targeted therapy, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Chaitra Rai *Department of Medicine, Division of Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, TX, USA.
Hang Ruan *Jiangsu Key Laboratory of Infection and Immunity, MOE Key Laboratory of Geriatric Diseases and Immunology, Institutes of Biology and Medical Sciences, Suzhou Medical College, Soochow University, Suzhou, China.ORCID http://orcid.org/0000-0001-7506-3805
Xue Li *Department of Medicinal Chemistry, State Key Laboratory of Discovery and Utilization of Functional Components in Traditional Chinese Medicine, Shandong Key Laboratory of Druggability Optimization and Evaluation for Lead Compounds, School of Pharmaceutical Sciences, Shandong University, Jinan, China.
Wenbo Li *Department of Medicine, Division of Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, TX, USA.
Hyun-Hwan JeongDepartment of Pediatrics, Duncan Neurological Research Institute, Baylor College of Medicine, Houston, TX, USA.
Chengchuang SongDepartment of Medicine, Division of Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, TX, USA.
Panpan LiuDepartment of Medicine, Division of Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, TX, USA.
Yingjie ChangDepartment of Medicinal Chemistry, State Key Laboratory of Discovery and Utilization of Functional Components in Traditional Chinese Medicine, Shandong Key Laboratory of Druggability Optimization and Evaluation for Lead Compounds, School of Pharmaceutical Sciences, Shandong University, Jinan, China.
Hao FangDepartment of Medicinal Chemistry, State Key Laboratory of Discovery and Utilization of Functional Components in Traditional Chinese Medicine, Shandong Key Laboratory of Druggability Optimization and Evaluation for Lead Compounds, School of Pharmaceutical Sciences, Shandong University, Jinan, China.
Udhaya Kumar SDepartment of Medicine, Division of Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-6639-3746
Yuxiang SunDepartment of Medicine, Division of Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, TX, USA.
M James YouDepartment of Hematopathology, Division of Pathology and Laboratory Medicine, the University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Dongyin GuanDepartment of Medicine, Division of Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, TX, USA.
Zhandong LiuDepartment of Pediatrics, Duncan Neurological Research Institute, Baylor College of Medicine, Houston, TX, USA.
Leng HanDepartment of Biostatistics and Health Data Science, School of Medicine, Indiana University, Indianapolis, Indiana, USA. lenghan@iu.edu.ORCID http://orcid.org/0000-0002-7380-2640
Xuben HouDepartment of Medicinal Chemistry, State Key Laboratory of Discovery and Utilization of Functional Components in Traditional Chinese Medicine, Shandong Key Laboratory of Druggability Optimization and Evaluation for Lead Compounds, School of Pharmaceutical Sciences, Shandong University, Jinan, China. hxb@sdu.edu.cn.ORCID http://orcid.org/0000-0002-8346-9001
Zheng SunDepartment of Medicine, Division of Endocrinology, Diabetes, and Metabolism, Baylor College of Medicine, Houston, TX, USA. zheng.sun@bcm.edu.ORCID http://orcid.org/0000-0002-6858-0633

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
UM1HG006348: Cas9 Genome Integrity Supplemental ProposalUM1HG006348 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI Jason D. Heaney, Chih-Wei Logan Hsu · 2016 to 2026
$47.5M
Consortium for Broad Based Disease Phenotyping of Knockout MiceU54HG006348 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI BEAUDET, ARTHUR L., PAYLOR, RICHARD E · 2011 to 2015
$17.0M
Noradrenergic mechanisms in breathing and respiratory pathophysiologiesR01HL130249 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI RAY, RUSSELL S · 2016 to 2024
$5.3M
METABOLIC IMPACTS OF TYPE II INTERFERON SIGNALS IN OBESITYR01DK114356 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI HARTIG, SEAN · 2017 to 2025
$4.6M
Training in Precision Environmental Health SciencesT32ES027801 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Cheryl L. Walker · 2018 to 2026
$2.8M
Inter- and transgenerational effects of paternal arsenic exposureR01ES034768 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Zheng Sun · 2023 to 2026
$1.9M
Circadian clock gene Rev-erb in memory dysfunction in Alzheimer's diseaseRF1AG069966 · NIA · BAYLOR COLLEGE OF MEDICINE · PI SUN, ZHENG · 2021 to 2021
$1.8M
Chemically inducible split base editors for precise and controllable in vivo genome editingR01HL173243 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI Xue Gao, Zheng Sun · 2025 to 2026
$1.3M
3D Circadian Enhancer-Promoter Interactions Mediated by ESRRG in NAFLD-to-HCC ProgressionR37CA296577 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Dongyin Guan · 2025 to 2026
$1.1M
Circadian clock gene Rev-erb in memory dysfunction in Alzheimer's diseaseR01AG069966 · NIA · BAYLOR COLLEGE OF MEDICINE · PI SUN, ZHENG · 2024 to 2025
$1.1M
De facto Target of Histone Deacetylase InhibitorsR21CA215591 · NCI · BAYLOR COLLEGE OF MEDICINE · PI SUN, ZHENG · 2017 to 2018
$345k
Cancer Prevention and Research Institute of Texas (Cancer Prevention Research Institute of Texas) R37CA296577Cancer Prevention and Research Institute of Texas (Cancer Prevention Research Institute of Texas) RR210029Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R21CA215591National Natural Science Foundation of China (National Science Foundation of China) 22377068NCI NIH HHS P30 CA125123NCI NIH HHS R21 CA215591NCI NIH HHS R37 CA296577NHGRI NIH HHS U54 HG006348NHGRI NIH HHS UM1 HG006348NHLBI NIH HHS R01 HL130249NHLBI NIH HHS R01 HL173243NIA NIH HHS R01 AG069966NIA NIH HHS RF1 AG069966NIDDK NIH HHS R01 DK114356NIEHS NIH HHS R01 ES034768NIEHS NIH HHS T32 ES027801UT | University of Texas MD Anderson Cancer Center (MD Anderson) LLS 6680-24
6 · The paper itself

Abstract

Histone deacetylase inhibitors (HDIs) are approved for treating hematologic cancers and are currently being evaluated in hundreds of clinical trials for various cancers and other diseases, although their mechanisms of action remain poorly understood. Here, our unbiased bioinformatics analyses found that, for most cancer types, expression levels or genetic variants of histone deacetylase (HDACs) do not consistently correlate with carcinogenesis, do not predict cancer patient survival, and do not associate with cellular responses to HDIs. Whole-genome CRISPR library screens did not identify HDACs as genes affecting cellular responses to HDIs. Overexpression of dominant-negative Class I HDACs causes similar protein hyperacetylation as Class I-specific HDI FK228, but does not have similar cytotoxic or transcriptomic effects as FK228 in vitro, and does not alter the anticancer effects of FK228 in vivo in a liver cancer mouse model. Chemical manipulations of a pan-HDI SAHA can abolish its HDAC-inhibiting activity without altering its anticancer effects in vivo in an allograft colon cancer mouse model. These results suggest that HDAC enzyme activity is not necessarily the de facto target of HDIs for their anticancer effects. This finding encourages a shift away from a narrow focus on HDACs for understanding HDIs' pharmacodynamics, opening new avenues for developing next-generation compounds for cancers and beyond.

Indexed as

Histone Deacetylase InhibitorsHistone DeacetylasesLiver NeoplasmsAnimalsCell Line, TumorDepsipeptidesHumansMiceDepsipeptidesHistone Deacetylase InhibitorsHistone Deacetylasesromidepsin

Identifiers

PMID42248845
PMCPMC13241515

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.