Evidence map›Paper›PMID 42239415›Full record

ArticlebioRxiv : the preprint server for biology2026

Transient cell states encode positional information to direct asymmetric growth.

Travis A Lee, Kamonkan Gamnerdsiri, Natanella Illouz-Eliaz, Tatsuya Nobori, Joseph R Nery, Bruce Jow, Michelle Liem, Caz O'Connor, Joseph R Ecker

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Travis A LeePlant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-8352-8956
Kamonkan GamnerdsiriPlant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Natanella Illouz-EliazPlant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-1001-6244
Tatsuya NoboriPlant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-1773-3361
Joseph R NeryGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-0153-5659
Bruce JowGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Michelle LiemFlow Cytometry Core Facility, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0009-0004-0542-7166
Caz O'ConnorFlow Cytometry Core Facility, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-3301-7912
Joseph R EckerHoward Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0001-5799-5895

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Alan Saghatelian · 1985 to 2026
$82.8M
Spectral Configured Bigfoot Sorter for Salk Institute Flow Cytometry CoreS10OD034268 · OD · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI O'CONNOR, CAROLYN PEY-MIN · 2023 to 2023
$724k
BD FACSAria Fusion for Flow Cytometry Core FacilityS10OD023689 · OD · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI ZHENG, YE · 2018 to 2018
$530k
Reversing the Irreversible: Reshaping Plant Growth upon Recovery from Severe StressK99GM154136 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Natanella Eliaz · 2025 to 2026
$248k
NCI NIH HHS P30 CA014195NIGMS NIH HHS K99 GM154136NIH HHS S10 OD023689NIH HHS S10 OD034268
6 · The paper itself

Abstract

How tissues generate asymmetric growth from spatially and temporally restricted signals remains a fundamental challenge in developmental biology. We show that transient cell states encode positional information that instructs asymmetric growth in plants. Using spatial single-cell transcriptomics and multi-omics, we uncover a surprisingly complex landscape of transient cell states in the apical hook, including a previously unrecognized population in the apical hypocotyl region that integrates developmental and hormonal cues and bifurcates into opposing growth trajectories. Gene regulatory network analysis and functional perturbation establish GATA TRANSCRIPTION FACTOR 2 (GATA2) as a central regulator that promotes cell elongation through gibberellin signaling. These results reveal that diverse, spatially localized transient cell states function as regulatory hubs that convert positional information into divergent growth programs, providing a unifying framework for how dynamic cellular states shape organ morphology.

Identifiers

PMID42239415
PMCPMC13228422

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.