Evidence map›Paper›PMID 42239345›Full record

ArticlebioRxiv : the preprint server for biology2026

Dissecting the role of PCNA and Pif1 in replication of individual DNA molecules by DNA polymerase δ.

Manal S Zaher, Carrie Stith, Ayush Mistry, Purna B Poudel, Edwin Antony, Peter M Burgers, Roberto Galletto

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Manal S ZaherDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0002-7785-4384
Carrie StithDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Ayush MistryDepartment of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO 63104, USA.ORCID 0000-0003-4755-6893
Purna B PoudelDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0002-3318-6900
Edwin AntonyDepartment of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO 63104, USA.ORCID 0000-0002-1888-054X
Peter M BurgersDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0002-3530-7235
Roberto GallettoDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0001-6435-122X

Funding

MECHANISMS OF DNA REPLICATION AND MAINTENANCE IN EUKARYOTESR35GM118129 · NIGMS · WASHINGTON UNIVERSITY · PI BURGERS, PETER M · 2016 to 2025
$6.7M
Coordination of DNA Metabolism by Replication Protein AR35GM149320 · NIGMS · SAINT LOUIS UNIVERSITY · PI Edwin Antony · 2023 to 2026
$2.3M
Functions of DNA helicases at hard-to-replicate sites and telomere regulationR35GM139508 · NIGMS · WASHINGTON UNIVERSITY · PI GALLETTO, ROBERTO · 2021 to 2025
$2.2M
Combined single-molecule fluorescence confocal and dual-trap optical tweezersS10OD030315 · OD · WASHINGTON UNIVERSITY · PI SORANNO, ANDREA · 2021 to 2021
$600k
NIGMS NIH HHS R35 GM118129NIGMS NIH HHS R35 GM139508NIGMS NIH HHS R35 GM149320NIH HHS S10 OD030315
6 · The paper itself

Abstract

PCNA loading and stabilization at primer-template junctions is crucial for processive DNA synthesis by replicative polymerases. It is also essential for strand displacement synthesis during Break Induced Replication (BIR). In this study, we employed a single molecule approach to directly visualize the role of PCNA, DNA polymerase δ and the Pif1 DNA helicase in these pathways. We first dissected the preferential loading of PCNA by RFC to 3'-junctions of gaps, nicks and flapped substrates. Moreover, we found that Pol δ and Pif1 both stabilize loaded PCNA and reduce its diffusion coefficient along DNA. We further show that the interaction of PCNA with Pol δ is essential for gap-filling synthesis. On a 5'-flapped substrate, we show that both Pol δ and Pif1 are required for strand displacement synthesis, while PCNA is not; although, it stimulates the process.

Identifiers

PMID42239345
PMCPMC13228308

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.