Evidence map›Paper›PMID 42239263›Full record

ArticlebioRxiv : the preprint server for biology2026

Long-read cDNA sequencing reveals novel isoforms and spliceosome-mutant-enriched transcripts in AML and MDS.

Christopher A Miller, Sridhar Nonavinkere Srivatsan, Michael H Kramer, Sai Mukund Ramakrishnan, Catrina C Fronick, Robert S Fulton, Casey D Katerndahl, Nichole M Helton, Timothy J Ley, Matthew J Walter

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Christopher A MillerDepartment of Medicine, Washington University in St Louis, St Louis, MO, USA.ORCID 0000-0003-4266-6700
Sridhar Nonavinkere SrivatsanDepartment of Medicine, Washington University in St Louis, St Louis, MO, USA.ORCID 0000-0001-6293-4632
Michael H KramerDepartment of Medicine, Washington University in St Louis, St Louis, MO, USA.ORCID 0000-0003-2544-7266
Sai Mukund RamakrishnanDepartment of Medicine, Washington University in St Louis, St Louis, MO, USA.ORCID 0000-0002-4500-6583
Catrina C FronickDepartment of Medicine, Washington University in St Louis, St Louis, MO, USA.
Robert S FultonDepartment of Medicine, Washington University in St Louis, St Louis, MO, USA.
Casey D KaterndahlDepartment of Medicine, Washington University in St Louis, St Louis, MO, USA.ORCID 0000-0002-7522-1946
Nichole M HeltonDepartment of Medicine, Washington University in St Louis, St Louis, MO, USA.
Timothy J LeyDepartment of Medicine, Washington University in St Louis, St Louis, MO, USA.
Matthew J WalterDepartment of Medicine, Washington University in St Louis, St Louis, MO, USA.ORCID 0000-0002-7753-1091

Funding

Specimen Acquistition and Expression ProfilingP01CA101937 · NCI · WASHINGTON UNIVERSITY · PI PAYTON, JACQUELINE E. · 2003 to 2023
$58.8M
Targeting the Bone Marrow Microenvironment In Acute Lymphocytic LeukemiaP50CA171963 · NCI · WASHINGTON UNIVERSITY · PI Daniel C Link · 2013 to 2026
$31.6M
Molecular Pathogenesis of Acute Myeloid LeukemiaR35CA197561 · NCI · WASHINGTON UNIVERSITY · PI Timothy J. Ley · 2015 to 2026
$11.0M
COMPREHENSIVE INFORMATIC ANALYSES OF AML GENOMES AND EPIGENOMESR50CA211782 · NCI · WASHINGTON UNIVERSITY · PI Christopher A Miller · 2017 to 2026
$1.5M
NCI NIH HHS P01 CA101937NCI NIH HHS P50 CA171963NCI NIH HHS R35 CA197561NCI NIH HHS R50 CA211782
6 · The paper itself

Abstract

The alternative splicing landscape of the leukemia transcriptome remains poorly characterized, since short-read sequencing cannot resolve complete transcript structures. Using the Oxford Nanopore cDNA platform, we generated nearly 2 billion long reads (median 25.8 million per sample) from 71 human samples, including 48 acute myeloid leukemia or myelodysplastic syndrome samples, 25 of which had splicing-factor gene mutations (in

Identifiers

PMID42239263
PMCPMC13228619

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.