Evidence map›Paper›PMID 42236792›Full record

ArticleScientific reports2026

Modulation of intestinal bile acids influences colonic mucosal responses.

Esther Wortmann, Tanja Groll, Anne Strigli, Kenneth Peuker, Colin Volet, Leona Arps, Rizlan Bernier-Latmani, Sebastian Zeissig, Katja Steiger, Moritz Middelhoff and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Esther WortmannFunctional Microbiome Research Group, Institute of Medical Microbiology, University Hospital of RWTH Aachen, Aachen, Germany.
Tanja GrollInstitute of Pathology, School of Medicine and Health, Technical University of Munich, Munich, Germany.
Anne StrigliDepartment of Internal Medicine A, University Medicine Greifswald, Greifswald, Germany.
Kenneth PeukerDepartment of Internal Medicine A, University Medicine Greifswald, Greifswald, Germany.
Colin VoletEnvironmental Microbiology Laboratory, School of Architecture, Civil and Environmental Engineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Leona ArpsComparative Experimental Pathology, School of Medicine and Health, Technical University of Munich, Munich, Germany.
Rizlan Bernier-LatmaniEnvironmental Microbiology Laboratory, School of Architecture, Civil and Environmental Engineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Sebastian ZeissigDepartment of Internal Medicine A, University Medicine Greifswald, Greifswald, Germany. sebastian.zeissig@unibe.ch.
Katja SteigerInstitute of Pathology, School of Medicine and Health, Technical University of Munich, Munich, Germany. katja.steiger@tum.de.
Moritz MiddelhoffDepartment of Internal Medicine II, TUM University Hospital, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Munich, Germany. Moritz.Middelhoff@mri.tum.de.
Thomas ClavelFunctional Microbiome Research Group, Institute of Medical Microbiology, University Hospital of RWTH Aachen, Aachen, Germany. tclavel@ukaachen.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundElevated levels of secondary bile acids produced by the gut microbiome, in particular deoxycholic acid (DCA), influence epithelial cell proliferation and accelerate the development of colorectal cancer (CRC) under adverse dietary conditions, such as long-term, high fat intake. However, their effects on the intestinal epithelium have not been studied in detail.

aimTo determine gut epithelial responses to bile acid modulation in vivo and in situ.

methodsWe performed targeted colonization of gnotobiotic mice followed by single-cell RNA sequencing (scRNA-Seq) of colonic epithelial cells combined with immunostaining of human biopsies from: (i) an observational patient cohort with hyperproliferative polyps or cancer; (ii) an interventional study with bile acid-scavenging drugs.

resultsColonization of mice with a defined bacterial community including the 7α-dehydroxylating species Extibacter muris resulted in DCA production. ScRNA-Seq of colonic epithelial cells revealed increased cell density of bile acid-sensitive enterocytes but fewer stem cells, goblet cells, and transit amplifying cells in mice exposed to DCA. This was associated with increased expression of pyruvate dehydrogenase kinase (Pdk4) and decreased expression of mucin (Muc2). PDK expression was also increased in human hyperplastic polyps and adenomas, whilst MUC2 expression was reduced in adenomas and carcinomas compared to normal mucosa. In addition, treatment of ileostomy patients with chologenic diarrhea using bile acid sequestrants was associated with enhanced epithelial proliferation in colorectal biopsies.

conclusionThis study provides insight into intestinal epithelial cell responses to bile acids and their potential clinical relevance.

Indexed as

Bile Acids and SaltsColonDeoxycholic AcidIntestinal MucosaAnimalsCell ProliferationColorectal NeoplasmsEpithelial CellsGastrointestinal MicrobiomeHumansMaleMiceMice, Inbred C57BLMucin-2Pyruvate Dehydrogenase Acetyl-Transferring KinaseBile Acids and SaltsDeoxycholic AcidMucin-2Pyruvate Dehydrogenase Acetyl-Transferring KinaseColorectal cancerGut epithelial proliferationGut microbiomeSecondary bile acids

Identifiers

PMID42236792
PMCPMC13234397

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.