Evidence map›Paper›PMID 42236117›Full record

ArticleJournal for immunotherapy of cancer2026

Spatially resolved single-cell landscape of tumor immunotypes reveals the central role of interferon signaling and plasmacytoid dendritic cells in triple-negative breast cancer.

Yi Liu, Jodi M Carter, Yaohua Ma, Sachin K Deshmukh, George W Sledge, Justin M Balko, Jennifer M Kachergus, Ji Shi, Mark Gregory, Jingjing Gong and 15 more

Abstract read
In one paragraph

Article in Journal for immunotherapy of cancer, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Yi Liu *Department of Quantitative Health Sciences, Mayo Clinic in Florida, Jacksonville, Florida, USA chumsri.saranya@mayo.edu Liu.Yi1@mayo.edu.ORCID http://orcid.org/0000-0001-6706-7806
Jodi M Carter *Department of Laboratory Medicine and Pathology, University of Alberta, Edmonton, Alberta, Canada.
Yaohua MaDepartment of Quantitative Health Sciences, Mayo Clinic in Florida, Jacksonville, Florida, USA.
Sachin K DeshmukhCaris Life Sciences Inc Phoenix, Phoenix, Arizona, USA.
George W SledgeCaris Life Sciences Inc Phoenix, Phoenix, Arizona, USA.
Justin M BalkoDepartment of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, USA.ORCID http://orcid.org/0000-0002-4263-5974
Jennifer M KachergusDepartment of Pioneering Science, Office of Core Shared Services, Mayo Clinic in Florida, Jacksonville, Florida, USA.
Ji ShiDepartment of Pioneering Science, Office of Core Shared Services, Mayo Clinic in Florida, Jacksonville, Florida, USA.
Mark GregoryNanoString Technologies Inc, Seattle, Washington, USA.
Jingjing GongNanoString Technologies Inc, Seattle, Washington, USA.
Heikki JoensuuDepartment of Oncology, HUS Helsinki University Hospital, Helsinki, Finland.
Edith A PerezDepartment of Cancer Biology, Mayo Clinic in Florida, Jacksonville, Florida, USA.
Daniel StoverThe Ohio State University Comprehensive Cancer Center Arthur G James Cancer Hospital and Richard J Solove Research Institute, Columbus, Ohio, USA.ORCID http://orcid.org/0000-0001-9003-8165
Lisa CareyUNC School of Medicine, Chapel Hill, North Carolina, USA.
William M SikovDepartment of Medicine, Brown University Warren Alpert Medical School, Providence, Rhode Island, USA.
Roberto Leon-FerreDepartment of Oncology, Mayo Clinic Rochester, Rochester, Minnesota, USA.ORCID http://orcid.org/0000-0003-0594-4441
Keith L KnutsonDepartment of Immunology, Mayo Clinic in Florida, Jacksonville, Florida, USA.ORCID http://orcid.org/0000-0001-9932-4467
Judy C BougheyDepartment of Surgery, Mayo Clinic Rochester, Rochester, Minnesota, USA.
James N IngleDepartment of Oncology, Mayo Clinic Rochester, Rochester, Minnesota, USA.
Krishna R KalariDepartment of Quantitative Health Sciences, Mayo Clinic Rochester, Rochester, Minnesota, USA.
Fergus J CouchDepartment of Laboratory Medicine and Pathology, Mayo Clinic Rochester, Rochester, Minnesota, USA.
Yan W AsmannDepartment of Quantitative Health Sciences, Mayo Clinic in Florida, Jacksonville, Florida, USA.
Matthew P GoetzDepartment of Oncology, Mayo Clinic Rochester, Rochester, Minnesota, USA.
E Aubrey Thompson *Department of Pioneering Science, Office of Core Shared Services, Mayo Clinic in Florida, Jacksonville, Florida, USA.
Saranya Chumsri *Department of Hematology and Oncology, Mayo Clinic in Florida, Jacksonville, Florida, USA chumsri.saranya@mayo.edu Liu.Yi1@mayo.edu.

Funding

Member Site CoreU10CA180821 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI Evanthia Galanis, Olwen Hahn · 2014 to 2026
$177.3M
Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI Lila J. Rutten · 1985 to 2026
$151.3M
The Role of CHFR in Tumorigenesis and Paclitaxel-Sensitivity in Breast CancerP50CA116201 · NCI · MAYO CLINIC ROCHESTER · PI PETER C LUCAS · 2005 to 2026
$49.9M
NCIC Clinical Trials Group - Canadian Collaborating Clinical Trials NetworkU10CA180863 · NCI · QUEEN'S UNIVERSITY AT KINGSTON · PI Janet Ellen Dancey · 2014 to 2026
$40.4M
THE ALLIANCE NCTN BIOREPOSITORY AND BIOSPECIMEN RESOURCEU24CA196171 · NCI · WASHINGTON UNIVERSITY · PI Mine Cicek, Wendy Frankel · 2015 to 2026
$35.0M
OSU as a Network Lead Academic Participating Site for the NCI NCTNUG1CA233331 · NCI · OHIO STATE UNIVERSITY · PI John L. Hays, Dwight H. Owen · 2019 to 2026
$8.9M
NCI, National Clinical Trials Network Lead Academic Participating Site (LAPS) UG1 (funded extension)UG1CA232760 · NCI · MAYO CLINIC ROCHESTER · PI Judy Caroline Boughey, Aaron Scott Mansfield · 2019 to 2026
$8.5M
Resolving the cancer relevance of predisposition gene mutationsR35CA253187 · NCI · MAYO CLINIC ROCHESTER · PI Fergus Joseph Couch · 2020 to 2026
$5.8M
UNC Lead Academic Participating SiteUG1CA233373 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CAREY, LISA A, DEES, ELIZABETH CLAIRE · 2019 to 2025
$3.5M
NCI NIH HHS P30 CA015083NCI NIH HHS P50 CA116201NCI NIH HHS R35 CA253187NCI NIH HHS U10 CA180821NCI NIH HHS U10 CA180863NCI NIH HHS U24 CA196171NCI NIH HHS UG1 CA232760NCI NIH HHS UG1 CA233331NCI NIH HHS UG1 CA233373
6 · The paper itself

Abstract

backgroundTumor-infiltrating lymphocytes (TILs) are established determinants of clinical outcomes in breast cancer.

methods212 TNBC tumors were classified into three immunotypes based on immune infiltrate location and density: immune desert (ID), immune excluded (IE), and immune inflamed (IN).

resultsPatients with IN tumors had significantly improved outcomes compared with ID tumors. Despite high sTILs, IE tumors showed poor outcomes similar to ID tumors. Single-cell spatial analysis revealed that ID and IE tumors exhibited reduced major histocompatibility complex I/II expression and fewer tumor-resident plasmacytoid dendritic cells (pDCs) compared with IN tumors, which were enriched for interferon-alpha (IFNα) and interferon-gamma (IFNγ) responses. High IFN response scores were associated with favorable outcomes across multiple therapy types in independent datasets. Deconvolution of RWCGD bulk RNA-seq data confirmed that pDC abundance correlated with improved outcomes specifically in hormone receptor-negative subtypes.

conclusionsOur study highlights pDCs and IFN signaling as hallmarks of effective anti-tumor immunity in TNBC. Immunotype-based profiling underscores the limited prognostic value of sTILs alone in immune-excluded tumors and supports pDCs and IFN pathways as potential biomarkers for prognosis and therapeutic development in TNBC.

Indexed as

Dendritic CellsInterferonsTriple Negative Breast NeoplasmsFemaleHumansLymphocytes, Tumor-InfiltratingSignal TransductionSingle-Cell AnalysisTumor MicroenvironmentInterferonsBiomarkerBreast CancerImmune modulatoryMajor histocompatibility complex - MHCTumor infiltrating lymphocyte - TIL

Identifiers

PMID42236117
PMCPMC13239575

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.