Evidence map›Paper›PMID 42233252›Full record

ArticleDatabase : the journal of biological databases and curation2026

GUTAID: a curated database linking gut microbial antigens to autoimmune mechanisms.

Laibah Hashmi, Shoaib Ur Rehman, Farzana Jabeen, Masood Ur Rehman Kayani

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Laibah HashmiMetagenomics Discovery Lab, Department of Sciences, School of Interdisciplinary Engineering & Sciences (SINES), National University of Sciences & Technology (NUST), Srinagar Highway, Sector H-12, Islamabad 44000, Pakistan.
Shoaib Ur RehmanMetagenomics Discovery Lab, Department of Sciences, School of Interdisciplinary Engineering & Sciences (SINES), National University of Sciences & Technology (NUST), Srinagar Highway, Sector H-12, Islamabad 44000, Pakistan.
Farzana JabeenSchool of Electrical Engineering and Computer Science (SEECS), National University of Sciences & Technology (NUST), Srinagar Highway, Sector H-12, Islamabad 44000, Pakistan.
Masood Ur Rehman KayaniMetagenomics Discovery Lab, Department of Sciences, School of Interdisciplinary Engineering & Sciences (SINES), National University of Sciences & Technology (NUST), Srinagar Highway, Sector H-12, Islamabad 44000, Pakistan.ORCID 0000-0002-7425-1756

Funding

Metagenomics Discovery Lab at the SINESNUST
6 · The paper itself

Abstract

Gut dysbiosis is widely recognized as a contributor to autoimmune diseases, as it can lead to the expression of microbial antigens that disrupt immune regulation through specific molecular mechanisms. However, existing resources do not systematically link gut microbial antigen sequences to the specific autoimmune mechanisms through which they act. Here, we present GUTAID (Gut Microbes in Autoimmune Disorders), a literature-curated database of gut microbial antigens annotated with experimentally supported autoimmune mechanisms. Peer-reviewed studies published from October 1970 to September 2024 were manually screened, yielding 73 potential antigens that operate through nine molecular mechanisms, including protein citrullination, epitope spreading, molecular mimicry, and immune modulation, amongst others. The corresponding protein sequences were retrieved from UniProtKB, and redundancy was removed with MMseqs2. For the database implementation, data were delivered through a lightweight LAMP (Linux-Apache-MySQL/MariaDB-PHP) stack with server-side HTML/Bootstrap rendering, MySQL indexing, and HTTPS-secured downloads. Users can browse, keyword-search, or bulk-download sequence archives via a five-tab interface (Home, Downloads, Search, Team, and About). GUTAID thus enables mechanism-oriented exploration of gut microbial antigens and supports downstream biomarker and therapeutic discovery in autoimmune research. Database URL:  https://gutaid.mgdiscoverylab.com/.

Indexed as

Antigens, BacterialAutoimmune DiseasesAutoimmunityDatabases, ProteinGastrointestinal MicrobiomeAnimalsBiocurationHumansAntigens, Bacterial

Identifiers

PMID42233252
PMCPMC13231167

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.