Evidence map›Paper›PMID 42230656›Full record

ArticleNPJ systems biology and applications2026

Multiscale hyperbolic embedding reveals hierarchical structure in complex biological systems.

Mingchen Yao, Anoop Praturu, Tatyana O Sharpee

Abstract read
In one paragraph

Article in NPJ systems biology and applications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Mingchen YaoComputational Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.
Anoop PraturuComputational Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.
Tatyana O SharpeeComputational Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA. sharpee@salk.edu.

Funding

AHA-Allen Initiative in Brain Health and Cognitive Impairment award made jointly through the American Heart Association and the Paul G. Allen Frontiers Group 19PABH134610000National Science Foundation PHY-2413080NSF Next Generation Networks for Neuroscience Program 2014217Salk Institute for Biological Studies Edwin K. Hunter Chair in Neurobiology
6 · The paper itself

Abstract

The rapid expansion of biological and computational datasets demands scalable methods that support both visualization and quantitative interpretation. Hyperbolic embeddings are well-suited to represent hierarchical structure, but existing approaches are limited by fixed curvature assumptions or poor scalability to large datasets. We introduce MuH-MDS, a multiscale hyperbolic multidimensional scaling algorithm that employs an adiabatic optimization strategy: local positions are iteratively refined while cluster centroids are temporarily fixed. This strategy accelerates computation by 10

Indexed as

Computational BiologySystems BiologyAlgorithmsAnimalsCaenorhabditis elegans

Identifiers

PMID42230656
PMCPMC13530193

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.