Evidence map›Paper›PMID 42225653›Full record

ArticleScientific data2026

Full-length transcriptome resource of the narrow-clawed crayfish, Pontastacus leptodactylus (Eschscholtz, 1832).

Yibin Chen, Yashi Hou, Shaoting Jia, Kezhi Gong, Xianyun Ren, Wenteng Xu, Wentao Ma, Jianjian Lv

Abstract readDataset
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yibin Chen *Guangdong Evergreen Feed Industry Co., Ltd., Evergreen Tower, No. 23, Leshan Road, Xiashan District, Zhanjiang City, Guangdong Province, China.
Yashi Hou *State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.
Shaoting Jia *State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.
Kezhi GongState Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.
Xianyun RenState Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.
Wenteng XuState Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.
Wentao MaXinjiang Xueyu Ehe Lobster Ecological Aquaculture Co., Ltd,, Jeminay, 836800, Xinjiang, China.
Jianjian LvState Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China. lvjj@ysfri.ac.cn.

Funding

Central Public-interest Scientific Institution Basal Research Fund, Chinese Academy of Fishery Sciences No. 2023TD50Science and Technology Program of Xinjiang Uyghur Autonomous Region 2025B02020
6 · The paper itself

Abstract

Pontastacus leptodactylus is a cold-water crayfish species widely distributed throughout eastern Europe and western Asia. In 2021, it was discovered in the Xinjiang Uygur Autonomous Region in China. Currently, there are no comprehensive reference genome or transcriptome for this species available. In this study, we utilized the PacBio Revio platform to conduct Iso-Seq third-generation full-length transcriptome sequencing of eight major tissues, including hepatopancreas, muscle, gill, heart, gonad, gastrointestinal tract, eyestalk and antennae gland from both male and female adults. After quality control, clustering, and removal of redundant sequences, a total of 137,800 isoforms were obtained. Functional annotation revealed that 103,325 transcripts were successfully annotated, with significant enrichment in KEGG pathways related to signal transduction, transport and metabolism, and cancer-related processes. Furthermore, our analysis revealed a substantial number of long non-coding RNAs (lncRNAs) in the transcriptome, with 40,646 lncRNAs predicted. To our knowledge, this work provides the first comprehensive transcriptomic resource for P. leptodactylus, which will support future efforts in germplasm conservation and utilization, as well as provide essential data for the assembly and annotation of a high-quality reference genome.

Indexed as

AstacoideaTranscriptomeAnimalsFemaleMaleMolecular Sequence AnnotationRNA, Long NoncodingRNA, Long Noncoding

Identifiers

PMID42225653
PMCPMC13522544

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.