Evidence map›Paper›PMID 42218968›Full record

ArticleClinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association2026

Development and External Validation of a Large Language Model-Based Clinical Decision-Support System for Colonoscopy Surveillance Intervals.

Ashwin Rao, Aman Bali, Vinh Tran, Shaleen Vasavada, Jinna Chu, Fasiha Kanwal, Craig Rusin, Hashem B El-Serag

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Article in Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Ashwin RaoSection of Gastroenterology and Hepatology, Department of Medicine, Baylor College of Medicine, Houston, Texas. Electronic address: ashwin.rao@bcm.edu.
Aman BaliSection of Gastroenterology and Hepatology, Department of Medicine, Baylor College of Medicine, Houston, Texas.
Vinh TranSection of Gastroenterology and Hepatology, Department of Medicine, Baylor College of Medicine, Houston, Texas.
Shaleen VasavadaDivision of Gastroenterology, Hepatology, and Nutrition, Department of Internal Medicine, University of Texas-Health at Houston, Houston, Texas.
Jinna ChuSection of Gastroenterology and Hepatology, Department of Medicine, Baylor College of Medicine, Houston, Texas.
Fasiha KanwalSection of Gastroenterology and Hepatology, Department of Medicine, Baylor College of Medicine, Houston, Texas.
Craig RusinDepartment of Pediatrics-Cardiology, Baylor College of Medicine, Houston, Texas.
Hashem B El-SeragSection of Gastroenterology and Hepatology, Department of Medicine, Baylor College of Medicine, Houston, Texas.

Funding

Consortium for Translational and Precision HealthUM1TR004539 · NCATS · BAYLOR COLLEGE OF MEDICINE · PI Bettina M. Beech, FASIHA KANWAL · 2024 to 2026
$17.1M
Research Training in GastroenterologyT32DK083266 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Hashem B El-Serag, FASIHA KANWAL · 2010 to 2026
$2.3M
NCATS NIH HHS UM1 TR004539NIDDK NIH HHS T32 DK083266
6 · The paper itself

Abstract

BACKGROUND &

aimsAdherence to guideline-based colonoscopy surveillance intervals remains suboptimal. Large language models show promise for automating interval assignment, but prior studies relied on proprietary models and have variably assessed generalizability. We developed and externally validated a clinical decision-support system that integrates locally deployable, open-source large language model-based variable extraction with a rules engine that encodes the 2020 United States Multi-Society Task Force guidelines.

methodsWe assembled development (n = 256), internal (n = 450), and external validation (n = 415) cohorts of colonoscopy-pathology dyads. We developed a 3-stage clinical decision-support system including: (1) large language model-based extraction of diagnosis-bearing sections from pathology reports; (2) large language model-based extraction of surveillance-relevant variables; and (3) deterministic assignment of surveillance intervals using United States Multi-Society Task Force logic. Seven open-source large language models (3.8-32B parameters) were benchmarked; the highest-performing model by macro-averaged F1 score was locked prior to validation. The primary outcome was guideline-concordant interval assignment (target, 90%); secondary outcomes included extraction performance and hallucination rate.

resultsThe best-performing open-source model, Gemma-27B-Instruct (macro-averaged F1 score, 0.992), was locked. The clinical decision-support system achieved 94.0% guideline-concordant surveillance interval assignment in internal validation (95% confidence interval, 91.8%-96.0%; κ = 0.92; 95% confidence interval, 0.89-0.95) and 92.8% concordance in external validation (95% confidence interval, 90.1%-95.2%; κ = 0.88; 95% confidence interval, 0.84-0.91). Misclassifications were primarily due to adenoma miscounting and diagnostic biopsies misinterpreted as resections. Hallucination-related errors occurred in fewer than 1% of cases.

conclusionsWe report an externally validated, hybrid large language model rules-based clinical decision-support system for colonoscopy surveillance that achieves >90% concordance while preserving transparency, auditability, and guideline traceability.

Indexed as

Artificial IntelligenceColorectal NeoplasiaGuideline AdherenceNatural Language Processing

Identifiers

PMID42218968
PMCPMC13543255

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.