Evidence map›Paper›PMID 42218259›Full record

Articlenpj biodiversity2026

An automated decision-making procedure for ranking and selecting species in biodiversity projects.

Torsten H Struck, Thomas Marcussen, Astrid Böhne, Rosa Fernández, José Melo-Ferreira, Isabelle Florent, Carmela Gissi, Christian de Guttry, Jennifer A Leonard, Seanna McTaggart and 8 more

Abstract read
In one paragraph

Article in npj biodiversity, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Torsten H StruckNatural History Museum, University of Oslo, Oslo, Norway. t.h.struck@nhm.uio.no.
Thomas MarcussenCentre for Ecological & Evolutionary Synthesis, University of Oslo, Oslo, Norway.
Astrid BöhneLeibniz Institute for the Analysis of Biodiversity Change, Museum Koenig Bonn, Bonn, Germany.
Rosa FernándezMetazoa Phylogenomics and Genome Evolution Lab, Institute of Evolutionary Biology (CSIC-UPF), Barcelona, Spain.
José Melo-FerreiraCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Vairão, Portugal.
Isabelle FlorentUMR7245, National Museum of Natural History and CNRS, Paris, France.
Carmela GissiDipartimento di Bioscienze, Biotecnologie e Ambiente, Università degli Studi di Bari "Aldo Moro", Bari, Italy.
Christian de GuttrySIB Swiss Institute of Bioinformatics, Environmental Bioinformatics group, Amphipôle, Quartier UNIL-Sorge, 1015, Lausanne, Switzerland.
Jennifer A LeonardConservation and Evolutionary Genetics Group, Estación Biológica de Doñana (EBD-CSIC), Seville, Spain.
Seanna McTaggartEarlham Institute, Norwich Research Park, Norwich, United Kingdom.
Camila J MazzoniDepartment of Evolutionary Genetics, Leibniz Institute for Zoo- and Wildlife Research (IZW), Berlin, Germany.
Rita MonteiroLeibniz Institute for the Analysis of Biodiversity Change, Museum Koenig Bonn, Bonn, Germany.
Olga Vinnere PetterssonScience for Life Laboratory - Sweden (SciLifeLab), National Genomics Infrastructure, Uppsala University, Uppsala, Sweden.
João PimentaCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Vairão, Portugal.
Jaakko PohjoismäkiDepartment of Environmental and Biological Sciences, University of Eastern Finland, Joensuu, Finland.
Katja ReichelDahlem Center of Plant Sciences, Institute of Biology, Freie, Universität Berlin, Berlin, Germany.
Andrii TarieievInstitute of Biology, Geobotany and Botanical Garden,, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.
Rebekah A OomenNatural History Museum, University of Oslo, Oslo, Norway.

Funding

HORIZON EUROPE European Research Council 101059492Norges Forskningsråd 300587Swiss State Secretariat for Education, Research and Innovation (SERI) 22.00173 & 24.00054
6 · The paper itself

Abstract

In large-scale biodiversity genomics projects, the number of species that could be sequenced exceeds the resources available. Species selection is therefore a crucial component, requiring clear criteria and procedures. In a bottom-up approach, the Biodiversity Genomics Europe (BGE) project implemented an Automated Decision-Making (ADM) process for species selection based on objective criteria and tested it on simulated and empirical data. Here, we present this species ranking ADM process, which includes three stages: exclusion, ranking, and feasibility check. The composition of selected species retained the diversity of the community-nominated species pool for key taxonomic, geographic, and demographic assessment criteria while reducing bias. Feasibility and funding limits influenced the final selection more than other factors, indicating that investments in these areas would improve available reference-genome diversity. The ADM achieved species selection for genome sequencing in a large-scale biodiversity project in a relatively objective manner consistent with the broader European biodiversity genomic community's priorities.

Identifiers

PMID42218259
PMCPMC13626951

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.