Evidence map›Paper›PMID 42216759›Full record

ArticleNucleic acids research2026

Single-base resolution atlas reveals moderate conservation and regulatory diversity of m6A modifications across mammals.

Xiaoxiao Zhang, Zhan Zhang, Weiqiang Liu, Wenfu Liu, Meng Li, Weixiao Chen, Gaoming Liu, Yichen Dai, Zihao Li, Chunyan Hu and 5 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Xiaoxiao ZhangState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Zhan ZhangState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Weiqiang LiuState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0002-2429-8791
Wenfu LiuState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Meng LiState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Weixiao ChenState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Gaoming LiuState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Yichen DaiSchool of Life Sciences, Fudan University, Shanghai 200438, China.
Zihao LiState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Chunyan HuState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Qi PanState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Yang YuSchool of Life Sciences, University of Science and Technology of China, Anhui 230026, China.
Xiangye LiuState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Pingfen ZhuState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
Xuming ZhouState Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0002-1100-6294

Funding

Institute of Zoology, Chinese Academy of Sciences 2023IOZ0104National Key Research and Development Projects of the Ministry of Science and Technology of China 2023YFC3304000National Natural Science Foundation of China 32270437Prevention and Control of Emerging and Major Infectious Diseases-National Science and Technology Major Project 2026ZD01911000
6 · The paper itself

Abstract

RNA methylation, notably m6A modification, is a predominant epitranscriptomic alteration in mRNA, yet its evolutionary properties and the selective constraints acting on it across mammals remain poorly understood. Here, we generated a single-base-resolution m6A modification atlas in liver, kidney, and brain tissues across 21 non-model mammals using Nanopore direct RNA sequencing. We found that 25.54-35.70% of orthologous transcripts across examined species harbor m6A modifications, with m6A-modified sites exhibiting significantly greater conservation than nearby unmodified regions, probably under purifying selection. While m6A sites were preferentially enriched in RNA loops rather than stems, an inverse correlation between overall m6A levels and RNA splicing complexity was observed, a pattern which is compatible with a model in which exon junction complex (EJC)-associated, splice-junction-proximal mechanisms contribute to suppression of nearby m6A deposition. Further analyses of m6A-modified genes and life history traits uncovered that genes with higher m6A modification ratios in long-lived mammals were mainly characterized by relaxed selection. This study explores the evolutionary landscape of m6A modifications in non-model organisms, underscoring their diverse regulatory roles and evolutionary significance across mammalian lineages.

Indexed as

AdenosineMammalsRNA, MessengerAnimalsBrainEpitranscriptomeEpitranscriptomicsEvolution, MolecularHumansKidneyLiverRNA MethylationRNA SplicingSequence Analysis, RNAAdenosineRNA, Messenger

Identifiers

PMID42216759
PMCPMC13221654

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.