Evidence map›Paper›PMID 42215548›Full record

ArticleScientific reports2026

Sorting endosomes play key roles in presentation of Mycobacterium tuberculosis-derived ligands to MAIT cells.

Allison E Tammen, Jessie C Peterson, Aneta Worley, David M Lewinsohn, Elham Karamooz

Abstract read
In one paragraph

Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Allison E TammenDepartment of Molecular Microbiology and Immunology, Oregon Health & Science University, Portland, OR, 97239, USA.
Jessie C PetersonVA Portland Health Care System, Portland, OR, 97239, USA.
Aneta WorleyVA Portland Health Care System, Portland, OR, 97239, USA.
David M LewinsohnVA Portland Health Care System, Portland, OR, 97239, USA.
Elham KaramoozVA Portland Health Care System, Portland, OR, 97239, USA. karamooz@ohsu.edu.

Funding

Oregon Clinical and Translational Research Institute - The National COVID Cohort Collaborative (N3C)UL1TR002369 · NCATS · OREGON HEALTH & SCIENCE UNIVERSITY · PI Cynthia D Morris, Christopher G. Slatore · 2017 to 2026
$78.4M
Lung Resident, MR1-Restricted T Cells: Association with Differential Outcomes Following Exposure to M. TuberculosisR01AI134790 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI LEWINSOHN, DAVID M., WALZL, GERHARD · 2018 to 2022
$3.3M
Program in Biomedical SciencesT32GM142619 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI Jeffrey Wallace Tyner · 2021 to 2026
$3.2M
Interdisciplinary Training in Microbial Pathogenesis and ImmunologyT32AI170496 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI Patrizia Caposio, Scott M Landfear · 2023 to 2026
$1.5M
MR1-dependent presentation of Mycobacterium tuberculosis: a unique role for calcium signalingK08AI153359 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI KARAMOOZ, ELHAM · 2020 to 2024
$925k
Calcium Signaling in MR1-Dependent Antigen PresentationR21AI151079 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI KARAMOOZ, ELHAM · 2020 to 2021
$424k
The impact of two-pore channel calcium signaling on MR1 antigen presentation of Mycobacterium tuberculosis metabolitesF31AI186352 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI Allison Tammen · 2025 to 2026
$100k
BLRD VA I01 BX000533National Institute of Allergy and Infectious Diseases AI134790National Institute of Allergy and Infectious Diseases AI151079National Institute of Allergy and Infectious Diseases AI186352-01A1NCATS NIH HHS UL1 TR002369NIAID NIH HHS F31 AI186352NIAID NIH HHS K08 AI153359NIAID NIH HHS R01 AI134790NIAID NIH HHS R21 AI151079NIAID NIH HHS T32 AI170496NIGMS NIH HHS GM142619-01NIGMS NIH HHS T32 GM142619U.S. Department of Veterans Affairs BX000533
6 · The paper itself

Abstract

The immune system has developed specialized mechanisms to recognize intracellular pathogens such as Mycobacterium tuberculosis (Mtb). Major Histocompatibility Complex Class I-Related protein 1 (MR1) is a conserved nonclassical antigen presenting molecule that presents ligands derived from microbial riboflavin synthesis to Mucosal Associated Invariant T (MAIT) cells. While endosomal trafficking facilitates MR1 antigen presentation during Mtb infection, the exact mechanisms by which MR1 loading of Mtb-derived ligands occurs are not known. We found that trafficking through sorting endosomes mediates MR1 antigen presentation during Mtb infection. Sorting endosomes utilize trafficking proteins such as Syntaxin (Stx) 6, Stx12, Stx16 and VAMP4. Prior work demonstrates the importance of VAMP4 for MR1 presentation during Mtb infection; we have found that Stx12 and Stx16 are also important. Interference with Stx12 or Stx16 via siRNA-mediated knockdown reduces MR1 antigen presentation of Mtb. Using RFP-tagged constructs, we found Stx16 co-localized more with MR1 vesicles compared to Stx12 in MR1-GFP expressing airway epithelial cells. Stx12 and Stx16 blockade increase MR1 surface stabilization and total expression, indicating that impaired endosomal trafficking hinders MR1 internalization. Together, these findings support a role for sorting endosomes in the selective sampling of the intracellular environment and MR1-mediated recognition of Mtb-infected cells.

Indexed as

Antigen PresentationEndosomesMucosal-Associated Invariant T CellsMycobacterium tuberculosisHistocompatibility Antigens Class IHumansLigandsMinor Histocompatibility AntigensProtein TransportQa-SNARE ProteinsHistocompatibility Antigens Class ILigandsMinor Histocompatibility AntigensMR1 protein, humanQa-SNARE ProteinsAntigen presentationEndosomal trafficking proteinsMAIT cellsMR1Mycobacterium tuberculosisSyntaxins

Identifiers

PMID42215548
PMCPMC13478399

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.