Evidence map›Paper›PMID 42213302›Full record

ArticleBulletin of mathematical biology2026

Methods for Analyzing RNA Pseudoknots via Chord Diagrams and Intersection Graphs.

Rayan Ibrahim, Allison H Moore

Abstract read
In one paragraph

Article in Bulletin of mathematical biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Rayan Ibrahim *Department of Mathematics, Lafayette College, 233 Pardee Hall, 18042, Easton, PA, USA.ORCID http://orcid.org/0000-0002-4578-5230
Allison H Moore *Department of Mathematics & Applied Mathematics, Virginia Commonwealth University, 1015 Floyd Ave., 23284, Richmond, VA, USA. moorea14@vcu.edu.ORCID http://orcid.org/0000-0002-3266-9601

Funding

Directorate for Mathematical and Physical Sciences DMS-2204148Thomas F. and Kate Miller Jeffress Memorial Trust NA
6 · The paper itself

Abstract

RNA molecules are known to form complex secondary structures including pseudoknots. A systematic framework for the enumeration, classification and prediction of secondary structures is critical to determine the biological significance of the molecular configurations of RNA. Chord diagrams are mathematical objects widely used to represent RNA secondary structures and to analyze structural motifs, however a mathematically rigorous enumeration of pseudoknots remains a challenge. We introduce a method that incorporates a distance-based metric

Indexed as

Nucleic Acid ConformationRNAAlgorithmsBase SequenceComputational BiologyDatabases, Nucleic AcidMathematical ConceptsRNAChord diagramIntersection graphPseudoknotRNAVertex cover

Identifiers

PMID42213302
PMCPMC13221419

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.